Variant report

Variant	esv3413647
Chromosome Location	chr11:63550425-63582789
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:741)
CpG islands
(count:549)
Chromatin interactive
region (count:58)
LncRNA
region (count:3)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:741 , 50 per page) page: 1 2 3 4 5 6 7 ... 15

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr11:63580094-63580332	K562	blood:	n/a	n/a
2	ARID3A	chr11:63570483-63571073	K562	blood:	n/a	n/a
3	ATF1	chr11:63570362-63570809	K562	blood:	n/a	n/a
4	ATF3	chr11:63570442-63570893	K562	blood:	n/a	n/a
5	BACH1	chr11:63580311-63581792	H1-hESC	embryonic stem cell:	n/a	n/a
6	BHLHE40	chr11:63580662-63580954	HepG2	liver:	n/a	n/a
7	BHLHE40	chr11:63551882-63551884	HepG2	liver:	n/a	n/a
8	BHLHE40	chr11:63579674-63580295	K562	blood:	n/a	n/a
9	BHLHE40	chr11:63579332-63579338	K562	blood:	n/a	n/a
10	BHLHE40	chr11:63580553-63581300	K562	blood:	n/a	n/a
11	BHLHE40	chr11:63570441-63570803	K562	blood:	n/a	n/a
12	BHLHE40	chr11:63580589-63581657	GM12878	blood:	n/a	n/a
13	BRCA1	chr11:63570111-63570940	Hela-S3	cervix:	n/a	n/a
14	BRCA1	chr11:63580376-63580383	H1-hESC	embryonic stem cell:	n/a	n/a
15	BRCA1	chr11:63581942-63581960	H1-hESC	embryonic stem cell:	n/a	n/a
16	BRCA1	chr11:63581166-63581366	Hela-S3	cervix:	n/a	n/a
17	CBX3	chr11:63580027-63580911	K562	blood:	n/a	n/a
18	CBX3	chr11:63559158-63559639	K562	blood:	n/a	n/a
19	CBX3	chr11:63559179-63559599	K562	blood:	n/a	n/a
20	CBX3	chr11:63570187-63570942	K562	blood:	n/a	n/a
21	CBX3	chr11:63559192-63559716	HCT-116	colon:	n/a	n/a
22	CBX3	chr11:63581023-63581342	K562	blood:	n/a	n/a
23	CCNT2	chr11:63580400-63581714	K562	blood:	n/a	chr11:63581324-63581333 chr11:63581330-63581339
24	CEBPB	chr11:63570100-63570439	IMR90	lung:	n/a	n/a
25	CEBPB	chr11:63577877-63578092	HepG2	liver:	n/a	chr11:63577998-63578009
26	CEBPB	chr11:63577896-63578142	HepG2	liver:	n/a	chr11:63577998-63578009
27	CEBPB	chr11:63570059-63570973	Hela-S3	cervix:	n/a	n/a
28	CEBPB	chr11:63577934-63578081	HepG2	liver:	n/a	chr11:63577998-63578009
29	CEBPB	chr11:63570107-63570716	A549	lung:	n/a	n/a
30	CEBPB	chr11:63577937-63578064	H1-hESC	embryonic stem cell:	n/a	chr11:63577998-63578009
31	CEBPB	chr11:63570154-63570399	A549	lung:	n/a	n/a
32	CEBPB	chr11:63551327-63551457	A549	lung:	n/a	chr11:63551390-63551401
33	CEBPB	chr11:63577456-63577570	HepG2	liver:	n/a	chr11:63577460-63577471
34	CEBPB	chr11:63551375-63551434	HepG2	liver:	n/a	chr11:63551390-63551401
35	CEBPB	chr11:63551334-63551432	IMR90	lung:	n/a	chr11:63551390-63551401
36	CEBPB	chr11:63570192-63570409	HepG2	liver:	n/a	n/a
37	CEBPB	chr11:63566445-63566451	K562	blood:	n/a	n/a
38	CEBPB	chr11:63577414-63577516	K562	blood:	n/a	chr11:63577460-63577471
39	CEBPB	chr11:63570164-63570706	K562	blood:	n/a	n/a
40	CEBPD	chr11:63580496-63581130	HepG2	liver:	n/a	n/a
41	CEBPD	chr11:63581417-63581674	HepG2	liver:	n/a	n/a
42	CHD1	chr11:63581105-63581402	GM12878	blood:	n/a	n/a
43	CHD1	chr11:63581653-63582154	H1-hESC	embryonic stem cell:	n/a	n/a
44	CHD2	chr11:63580576-63580578	HepG2	liver:	n/a	n/a
45	CHD2	chr11:63581104-63581562	GM12878	blood:	n/a	n/a
46	CHD2	chr11:63570179-63570931	Hela-S3	cervix:	n/a	n/a
47	CHD2	chr11:63570479-63570701	K562	blood:	n/a	n/a
48	CHD2	chr11:63580525-63580853	GM12878	blood:	n/a	n/a
49	CHD2	chr11:63581971-63582020	H1-hESC	embryonic stem cell:	n/a	n/a
50	CHD2	chr11:63580407-63582035	Hela-S3	cervix:	n/a	chr11:63580938-63580948 chr11:63581081-63581091

(count:549 , 50 per page) page: 1 2 3 4 5 6 7 ... 11

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr11:63581739-63581789	NHBE	bronchial:	n/a
2	chr11:63580553-63580603	HepG2	liver:	n/a
3	chr11:63581814-63581864	GM12891	blood:	n/a
4	chr11:63581739-63581789	SK-N-SH	brain:	n/a
5	chr11:63580619-63580669	PFSK-1	brain:	n/a
6	chr11:63581631-63581681	ECC-1	luminal epithelium:	n/a
7	chr11:63580733-63580783	AG04449	skin:	fetal
8	chr11:63579540-63579590	PFSK-1	brain:	n/a
9	chr11:63581739-63581789	AoSMC	blood vessel:	n/a
10	chr11:63580733-63580783	AG10803	skin:	n/a
11	chr11:63580733-63580783	SKMC	muscle:	n/a
12	chr11:63581433-63581483	SK-N-SH_RA	brain:	n/a
13	chr11:63581739-63581789	HRE	kidney:	n/a
14	chr11:63580733-63580783	SK-N-SH_RA	brain:	n/a
15	chr11:63580619-63580669	BJ	skin:	n/a
16	chr11:63581631-63581681	BJ	skin:	n/a
17	chr11:63580733-63580783	Hepatocyte	liver:	n/a
18	chr11:63581631-63581681	HCPEpiC	choroid plexus:	n/a
19	chr11:63581739-63581789	K562	blood:	n/a
20	chr11:63581433-63581483	AG04449	skin:	fetal
21	chr11:63580553-63580603	RPTEC	kidney:	n/a
22	chr11:63580553-63580603	HL-60	blood:	n/a
23	chr11:63581631-63581681	Hela-S3	cervix:	n/a
24	chr11:63581119-63581169	CMK	blood:	n/a
25	chr11:63581433-63581483	HPAEpiC	pulmonary alveolar:	n/a
26	chr11:63580619-63580669	A549	lung:	n/a
27	chr11:63580733-63580783	HCF	heart:	n/a
28	chr11:63580553-63580603	AoSMC	blood vessel:	n/a
29	chr11:63580733-63580783	HMEC	breast:	n/a
30	chr11:63580553-63580603	HCM	heart:	n/a
31	chr11:63581814-63581864	Hepatocyte	liver:	n/a
32	chr11:63581631-63581681	GM12892	blood:	n/a
33	chr11:63579540-63579590	HNPCEpiC	eye:	n/a
34	chr11:63581631-63581681	PrEC	prostate:	n/a
35	chr11:63580733-63580783	CMK	blood:	n/a
36	chr11:63580619-63580669	IMR90	lung:	fetal
37	chr11:63581119-63581169	SK-N-SH	brain:	n/a
38	chr11:63581119-63581169	HepG2	liver:	n/a
39	chr11:63580733-63580783	HRE	kidney:	n/a
40	chr11:63581433-63581483	U87	brain:	n/a
41	chr11:63581739-63581789	U87	brain:	n/a
42	chr11:63581433-63581483	K562	blood:	n/a
43	chr11:63581631-63581681	Caco-2	colon:	n/a
44	chr11:63581631-63581681	HPAEpiC	pulmonary alveolar:	n/a
45	chr11:63580553-63580603	GM12892	blood:	n/a
46	chr11:63581739-63581789	PrEC	prostate:	n/a
47	chr11:63580733-63580783	HUVEC	blood vessel:	n/a
48	chr11:63581433-63581483	Caco-2	colon:	n/a
49	chr11:63581631-63581681	HEK293	kidney:	embryo
50	chr11:63581814-63581864	AoSMC	blood vessel:	n/a

(count:58 , 50 per page) page: 1 2

No.	Distal block	Cell Line	Cell type
1	chr11:63571565..63574234-chr11:63577840..63579513,2	K562	blood:
2	chr11:63580161..63582030-chr11:63668287..63670430,2	MCF-7	breast:
3	chr11:63532131..63535124-chr11:63579146..63582872,4	K562	blood:
4	chr11:63579430..63582335-chr11:63993670..63995611,2	K562	blood:
5	chr11:63569863..63570705-chr11:63580756..63581280,2	Hela-S3	cervix:
6	chr11:63550785..63552741-chr11:63579503..63582374,2	MCF-7	breast:
7	chr11:63580615..63581131-chr19:49468375..49469008,2	Hela-S3	cervix:
8	chr11:63448233..63451551-chr11:63578408..63582128,5	K562	blood:
9	chr11:63582446..63585592-chr11:63592203..63594925,4	K562	blood:
10	chr11:63581119..63583081-chr11:63638472..63640533,2	K562	blood:
11	chr11:63448971..63451551-chr11:63580454..63582597,3	K562	blood:
12	chr11:63535611..63537592-chr11:63569044..63572004,3	MCF-7	breast:
13	chr11:62520403..62522717-chr11:63579678..63581641,2	MCF-7	breast:
14	chr11:63568932..63571893-chr11:63593228..63594762,2	MCF-7	breast:
15	chr10:38145568..38146527-chr11:63570146..63570678,2	Hela-S3	cervix:
16	chr11:63579552..63584409-chr11:63604789..63609677,6	K562	blood:
17	chr11:63534835..63538239-chr11:63570214..63572925,3	MCF-7	breast:
18	chr11:63546974..63548938-chr11:63550059..63551593,2	MCF-7	breast:
19	chr11:63581485..63582340-chr5:43483433..43484029,2	Hela-S3	cervix:
20	chr11:63436319..63439202-chr11:63579775..63581446,2	MCF-7	breast:
21	chr11:63580750..63581424-chr9:128003259..128003826,2	Hela-S3	cervix:
22	chr11:63570205..63572019-chr11:63580900..63582897,2	MCF-7	breast:
23	chr11:63533402..63535390-chr11:63566674..63568778,2	MCF-7	breast:
24	chr11:63571565..63574234-chr11:63577840..63579513,2	K562	blood:
25	chr11:63322621..63325440-chr11:63554717..63556555,2	K562	blood:
26	chr1:121484247..121485026-chr11:63551556..63552380,2	MCF-7	breast:
27	chr11:63570205..63572019-chr11:63580900..63582897,2	MCF-7	breast:
28	chr11:63532131..63538052-chr11:63579345..63585604,10	K562	blood:
29	chr11:63580673..63581365-chr5:32444535..32445243,2	NB4	blood:
30	chr11:63582446..63584284-chr11:63593106..63594925,2	K562	blood:
31	chr11:63579621..63581291-chr11:63753774..63755303,2	MCF-7	breast:
32	chr11:63568859..63571826-chr11:63579605..63584324,5	K562	blood:
33	chr11:63581060..63583015-chr11:63654229..63655873,2	MCF-7	breast:
34	chr11:63437085..63438927-chr11:63580871..63582709,2	MCF-7	breast:
35	chr11:63532069..63539323-chr11:63579489..63583130,14	MCF-7	breast:
36	chr11:63556238..63558585-chr11:63579066..63581598,2	MCF-7	breast:
37	chr11:63580937..63581636-chr4:166033563..166034366,2	Hela-S3	cervix:
38	chr11:63525704..63527853-chr11:63578506..63580593,2	K562	blood:
39	chr11:63580373..63581171-chr20:62496104..62496766,2	HCT-116	colon:
40	chr11:63580858..63581436-chr5:40834265..40835260,2	Hela-S3	cervix:
41	chr11:63535333..63536207-chr11:63581006..63582322,3	MCF-7	breast:
42	chr11:63580678..63581483-chrX:19002609..19003358,2	Hela-S3	cervix:
43	chr11:63577221..63582686-chr11:63583021..63587487,9	MCF-7	breast:
44	chr11:63579552..63583589-chr11:63604564..63608557,6	K562	blood:
45	chr11:63571872..63573739-chr11:63580573..63582392,2	K562	blood:
46	chr11:63579193..63582428-chr11:63682051..63685961,4	K562	blood:
47	chr11:63569529..63574543-chr11:63580305..63583483,5	MCF-7	breast:
48	chr11:63533773..63537846-chr11:63579275..63583196,6	MCF-7	breast:
49	chr11:63582237..63585723-chr11:63588277..63590938,5	MCF-7	breast:
50	chr11:63582150..63582705-chr11:63604619..63605149,2	MCF-7	breast:

(count:3 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RCOR2-1	chr11:63580192-63580748	NONHSAT021909
2	lnc-RCOR2-6	chr11:63565260-63565543	NONHSAT021910
3	lnc-RCOR2-1	chr11:63580192-63580588	XLOC_009458

No data

Variant related genes	Relation type
C11orf84	TF binding region
RN7SL596P	TF binding region
C11orf84	CpG island
RN7SL596P	CpG island
ENSG00000151881	chromatin interactions
ENSG00000044446	chromatin interactions
ENSG00000044574	chromatin interactions
ENSG00000087086	chromatin interactions
ENSG00000198105	chromatin interactions
ENSG00000101150	chromatin interactions
ENSG00000056097	chromatin interactions
ENSG00000188070	chromatin interactions
ENSG00000185347	chromatin interactions
ENSG00000184743	chromatin interactions
ENSG00000168005	chromatin interactions
ENSG00000149743	chromatin interactions
ENSG00000167771	chromatin interactions
ENSG00000255651	chromatin interactions
ENSG00000170088	chromatin interactions
ENSG00000145592	chromatin interactions
ENSG00000072518	chromatin interactions
ENSG00000133318	chromatin interactions
ENSG00000185670	chromatin interactions
ENSG00000167770	chromatin interactions
ENSG00000135945	chromatin interactions
ENSG00000149761	chromatin interactions
PSKH1	miRNA target sites

Extended variants
information (count: 1166 )
Associated
traits (count: 96 )

Variant overlapped rSNPs/rCNVs (count:1166 , 50 per page) page: 1 2 3 4 5 6 7 ... 24

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs523809	chr11:63550438-63550439	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs570523935	chr11:63550457-63550458	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs533927652	chr11:63550496-63550497	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs553259135	chr11:63550514-63550515	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs477063	chr11:63550517-63550518	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
6	rs541430492	chr11:63550541-63550542	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs555038328	chr11:63550542-63550543	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs574854530	chr11:63550557-63550558	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs543525251	chr11:63550566-63550567	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs149845127	chr11:63550578-63550579	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs181444161	chr11:63550583-63550584	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs545989950	chr11:63550629-63550630	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs551088089	chr11:63550682-63550683	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs370031853	chr11:63550683-63550684	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs368175308	chr11:63550703-63550704	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs145837219	chr11:63550728-63550729	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs200170942	chr11:63550747-63550748	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs147985875	chr11:63550767-63550768	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs528799236	chr11:63550787-63550788	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
20	rs368150485	chr11:63550841-63550842	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
21	rs12294309	chr11:63550904-63550905	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
22	rs367772670	chr11:63550912-63550913	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
23	rs523093	chr11:63550922-63550923	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
24	rs373683942	chr11:63550925-63550926	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
25	rs368771742	chr11:63550940-63550941	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
26	rs188417326	chr11:63550983-63550984	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
27	rs35403094	chr11:63550992-63550993	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
28	rs181847438	chr11:63551094-63551095	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
29	rs34109368	chr11:63551127-63551128	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
30	rs560938	chr11:63551128-63551129	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
31	rs546860338	chr11:63551142-63551143	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
32	rs566760536	chr11:63551162-63551163	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
33	rs535777670	chr11:63551205-63551206	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
34	rs186504298	chr11:63551252-63551253	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
35	rs201370353	chr11:63551272-63551273	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
36	rs372214663	chr11:63551273-63551274	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
37	rs537463619	chr11:63551274-63551275	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
38	rs375548420	chr11:63551341-63551342	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
39	rs557128733	chr11:63551346-63551347	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
40	rs191423587	chr11:63551369-63551370	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
41	rs545977883	chr11:63551385-63551386	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
42	rs375596297	chr11:63551386-63551387	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
43	rs183693002	chr11:63551395-63551396	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
44	rs573175949	chr11:63551399-63551400	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
45	rs575242154	chr11:63551402-63551403	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
46	rs542088120	chr11:63551414-63551415	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
47	rs140658090	chr11:63551430-63551431	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
48	rs543937825	chr11:63551452-63551453	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
49	rs540651692	chr11:63551524-63551525	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
50	rs7939940	chr11:63551535-63551536	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:96)

Disease	PMID	Source
Medulloblastoma	21979893	CNVD
Gastric cancer	17908304	CNVD
Multiple myeloma	20724749	CNVD
Wilms tumour	21544195	CNVD
Autism	22495311	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Non-small cell lung cancer	21385341	CNVD
Intellectual disability	22102821	CNVD
Glioblastoma multiforme	21138945	CNVD
Acute myeloid leukemia	20729466	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	21637783	CNVD
Acute myeloid leukemia	16864856	CNVD
Chronic lymphocytic leukemia	21795749	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Neuroblastoma	21484798	CNVD
Ewing''s sarcoma	21437220	CNVD
Oral cancer	21386901	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	20837533	CNVD
Breast cancer	21264507	CNVD
Cervical cancer	21063398	CNVD
Glioblastoma multiforme	19960244	CNVD
Liposarcoma	21253554	CNVD
Neuroblastoma	18923524	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Neuroblastoma	17533364	CNVD
Breast cancer	21364760	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Pituitary adenoma	18645599	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Prostate cancer	18632612	CNVD
Glioblastoma multiforme	21080181	CNVD
Smith-Lemli-Opitz syndrome	21572526	CNVD
Multiple myeloma	16461302	CNVD
Cancer	16751803	CNVD
Seminomas	18059402	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Metanephric adenoma	20802469	CNVD
Chordoma	21602918	CNVD
Melanoma	18172304	CNVD
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
ovarian endometriomas	16273235	CNVD
Breast cancer	21785460	CNVD
Breast cancer	16417655	CNVD
Myelofibrosis	22110671	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Prostate cancer	17217626	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
Breast cancer	21045282	CNVD
Breast cancer	21806811	CNVD
Breast cancer	22002566	CNVD
Ductal carcinoma	18381933	CNVD
Retinoblastoma	22278416	CNVD
Breast cancer	20953835	CNVD
oto-dental syndrome	17656375	CNVD
Asthma	21956041	CNVD
Breast cancer	17603634	CNVD
Ovarian neoplasms	16753589	CNVD
Non-small cell lung cancer	20864512	CNVD
Hepatocellular carcinoma	16750200	CNVD
Cervical cancer	21062161	CNVD
Breast cancer	21509527	CNVD
Anaplastic thyroid cancer	18753363	CNVD
Prostate cancer	18779856	CNVD
Cancer	17160897	CNVD
Breast cancer	17001317	CNVD
Oral squamous cell carcinoma	16619035	CNVD
Intracranial aneurysm	16715129	CNVD
Colorectal cancer	16272173	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Colorectal cancer	16882699	CNVD
Berardinelli-seip congenital generalized lipodystrophy	17668395	CNVD
Spinal muscular atrophy	17668395	CNVD
Neonatal seizures	17668395	CNVD
Neonatal seizures	17668391	CNVD
Neuroticism	17667963	CNVD
Cancer	17916600	CNVD
Squamous cell cancer	19047905	CNVD
Multiple endocrine neoplasia type 1	19566914	CNVD
XY sex reversal	17503084	CNVD
Berardinelli-seip congenital generalized lipodystrophy	17668391	CNVD
Maculopathy	17646752	CNVD
Breast cancer	17899364	CNVD
Breast cancer	17157792	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Breast cancer	22522925	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD

Chromatin state (count:830 , 50 per page) page: 1 2 3 4 5 6 7 ... 17

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63539400-63551400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:63545400-63551200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr11:63546800-63551600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr11:63547000-63551600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:63547000-63551800	Weak transcription	Fetal Stomach	stomach
6	chr11:63547200-63551600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr11:63547400-63551400	Weak transcription	Placenta	Placenta
8	chr11:63550200-63552200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr11:63551000-63551600	Enhancers	HepG2	liver
10	chr11:63551200-63552000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr11:63551400-63551800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr11:63551400-63552000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr11:63551400-63552000	Enhancers	Placenta	Placenta
14	chr11:63551600-63552000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
15	chr11:63551600-63552000	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr11:63551600-63552000	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr11:63551600-63552000	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr11:63551600-63552000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr11:63551600-63552000	Enhancers	A549	lung
20	chr11:63551600-63552200	Enhancers	ES-I3 Cell Line	embryonic stem cell
21	chr11:63551600-63552200	Enhancers	H1 Cell Line	embryonic stem cell
22	chr11:63551600-63552200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr11:63551600-63552200	Enhancers	HUES64 Cell Line	embryonic stem cell
24	chr11:63551600-63552200	Enhancers	Breast Myoepithelial Primary Cells	Breast
25	chr11:63551600-63552200	Flanking Active TSS	HepG2	liver
26	chr11:63551800-63552200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr11:63551800-63552200	Enhancers	Fetal Stomach	stomach
28	chr11:63552000-63552200	Enhancers	Fetal Kidney	kidney
29	chr11:63552000-63555600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
30	chr11:63552000-63556400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr11:63552200-63552800	Enhancers	HepG2	liver
32	chr11:63552800-63553200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
33	chr11:63553200-63557600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr11:63556400-63556600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
35	chr11:63557600-63558400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
36	chr11:63557600-63558600	Enhancers	Primary neutrophils fromperipheralblood	blood
37	chr11:63557800-63558200	Enhancers	Primary T cells fromperipheralblood	blood
38	chr11:63557800-63558400	Enhancers	Primary B cells from cord blood	blood
39	chr11:63557800-63558600	Enhancers	Primary B cells from peripheral blood	blood
40	chr11:63558600-63560800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr11:63559600-63560200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr11:63560800-63561200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr11:63562600-63562800	Enhancers	Lung	lung
44	chr11:63562600-63562800	Enhancers	Spleen	Spleen
45	chr11:63563000-63563800	Weak transcription	Spleen	Spleen
46	chr11:63563000-63564400	Weak transcription	Lung	lung
47	chr11:63563800-63564200	Enhancers	Spleen	Spleen
48	chr11:63564000-63564200	Enhancers	Adipose Nuclei	Adipose
49	chr11:63564200-63564600	Bivalent Enhancer	Adipose Nuclei	Adipose
50	chr11:63564200-63564600	Enhancers	Fetal Adrenal Gland	Adrenal Gland

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links