Variant report
| Variant | esv3413864 |
|---|---|
| Chromosome Location | chr4:28506565-28507041 |
| allele | n/a |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | rs112461708 | chr4:28506583-28506584 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 2 | rs79854166 | chr4:28506590-28506591 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 3 | rs1514120 | chr4:28506594-28506595 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 4 | rs565222683 | chr4:28506609-28506610 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 5 | rs185511901 | chr4:28506683-28506684 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 6 | rs551095035 | chr4:28506684-28506685 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 7 | rs567626928 | chr4:28506705-28506706 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 8 | rs536663746 | chr4:28506742-28506743 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 9 | rs7681477 | chr4:28506776-28506777 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 10 | rs567184173 | chr4:28506797-28506798 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 11 | rs538842920 | chr4:28506813-28506814 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 12 | rs559147013 | chr4:28506867-28506868 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 13 | rs28645352 | chr4:28506937-28506938 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 14 | rs537500978 | chr4:28506967-28506968 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 15 | rs554259689 | chr4:28506976-28506977 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 16 | rs1514119 | chr4:28506989-28506990 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 17 | rs199534723 | chr4:28507026-28507027 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
Variant related diseases (count:55)
| Disease | PMID | Source |
|---|---|---|
| Chronic lymphocytic leukemia | 21546498 | CNVD |
| Medulloblastoma | 21979893 | CNVD |
| Basal cell lymphoma | 17053054 | CNVD |
| Colorectal cancer | 19359472 | CNVD |
| Neuroblastoma | 17533364 | CNVD |
| Oral squamous cell carcinoma | 17134496 | CNVD |
| head and neck squamous cell carcinoma | 17671120 | CNVD |
| Cancer | 21637783 | CNVD |
| Melanoma | 21693616 | CNVD |
| Squamous cell cancer | 21044232 | CNVD |
| Colorectal cancer | 20709793 | CNVD |
| Esophageal squamous carcinoma | 21637470 | CNVD |
| Non-small cell lung cancer | 21044232 | CNVD |
| Ewing''s sarcoma | 21437220 | CNVD |
| Glioblastoma multiforme | 17387387 | CNVD |
| Endometrial cancer | 22040021 | CNVD |
| Breast cancer | 21264507 | CNVD |
| Glioblastoma multiforme | 19960244 | CNVD |
| Cervical cancer | 21062161 | CNVD |
| Gastrointestinal stromal cancer | 16982739 | CNVD |
| Acute lymphoblastic leukemia | 22237106 | CNVD |
| Glioblastoma multiforme | 21080181 | CNVD |
| Chordoma | 21602918 | CNVD |
| HIV/AIDS | 22032296 | CNVD |
| Neuroblastoma | 18923191 | CNVD |
| T-cell prolymphocytic leukemia | 19278963 | CNVD |
| Hodgkin''s lymphoma | 17606441 | CNVD |
| Thoracic aortic aneurysm | 21092924 | CNVD |
| Intellectual disability | 22102821 | CNVD |
| Autism | 22495311 | CNVD |
| Breast cancer | 21785460 | CNVD |
| Chronic lymphocytic leukemia | 20421269 | CNVD |
| Lung cancer | 18438408 | CNVD |
| Wilms tumour | 21544195 | CNVD |
| Breast cancer | 21858162 | CNVD |
| small cell lung cancer | 20016488 | CNVD |
| Cancer | 21183584 | CNVD |
| Small bowel adenocarcinoma | 21586687 | CNVD |
| Gastric cancer | 21586687 | CNVD |
| lymphocytic leukemia | 21291569 | CNVD |
| Basal cell lymphoma | 16317097 | CNVD |
| Diffuse large b-cell lymphoma | 16317097 | CNVD |
| Breast cancer | 16608533 | CNVD |
| Non-small cell lung cancer | 21829676 | CNVD |
| Melanoma | 22183965 | CNVD |
| Multiple myeloma | 17550852 | CNVD |
| Prostate cancer | 18632612 | CNVD |
| Olfactory neuroblastoma | 18408657 | CNVD |
| Burkitt''s lymphoma | 20823134 | CNVD |
| Cancer | 22183965 | CNVD |
| Melanoma | 18172304 | CNVD |
| Acute lymphoblastic leukemia | 20067559 | CNVD |
| Prostate cancer | 16573809 | CNVD |
| Myelofibrosis | 22110671 | CNVD |
| Non-syndromic sensorineural hearing loss | 17122850 | CNVD |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:28500000-28520400 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
