Variant report

Variant	esv3414413
Chromosome Location	chr11:107330392-107332340
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr11:107331000-107331142	MCF10A-Er-Src	breast:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr11:107331110-107331160	GM19239	blood:	n/a
2	chr11:107331110-107331160	AG10803	skin:	n/a
3	chr11:107331110-107331160	HRE	kidney:	n/a
4	chr11:107331110-107331160	HCPEpiC	choroid plexus:	n/a
5	chr11:107331110-107331160	GM06990	blood:	n/a
6	chr11:107331110-107331160	NH-A	brain:	n/a
7	chr11:107331110-107331160	SK-N-SH	brain:	n/a
8	chr11:107331110-107331160	Jurkat	blood:	n/a
9	chr11:107331110-107331160	GM12878	blood:	n/a
10	chr11:107331110-107331160	HRCEpiC	kidney:	n/a
11	chr11:107331110-107331160	SAEC	small airway:	n/a
12	chr11:107331110-107331160	HCM	heart:	n/a
13	chr11:107331110-107331160	PANC-1	pancreas:	n/a
14	chr11:107331110-107331160	NHDF-neo	bronchial:	n/a
15	chr11:107331110-107331160	T-47D	breast:	n/a
16	chr11:107331110-107331160	SK-N-MC	brain:	n/a
17	chr11:107331110-107331160	GM12891	blood:	n/a
18	chr11:107331110-107331160	NT2-D1	testis:	n/a
19	chr11:107331110-107331160	HUVEC	blood vessel:	n/a
20	chr11:107331110-107331160	ECC-1	luminal epithelium:	n/a
21	chr11:107331110-107331160	AG09319	gingival:	n/a
22	chr11:107331110-107331160	IMR90	lung:	fetal
23	chr11:107331110-107331160	CMK	blood:	n/a
24	chr11:107331110-107331160	Hepatocyte	liver:	n/a
25	chr11:107331110-107331160	MCF-7	breast:	n/a
26	chr11:107331110-107331160	HRPEpiC	eye:	n/a
27	chr11:107331110-107331160	HEK293	kidney:	embryo
28	chr11:107331110-107331160	HCF	heart:	n/a
29	chr11:107331110-107331160	HAEpiC	amniotic membrane:	n/a
30	chr11:107331110-107331160	PFSK-1	brain:	n/a
31	chr11:107331110-107331160	NHBE	bronchial:	n/a
32	chr11:107331110-107331160	AG04450	lung:	fetal
33	chr11:107331110-107331160	SK-N-SH_RA	brain:	n/a
34	chr11:107331110-107331160	NB4	blood:	n/a
35	chr11:107331110-107331160	HMEC	breast:	n/a
36	chr11:107331110-107331160	BJ	skin:	n/a
37	chr11:107331110-107331160	HNPCEpiC	eye:	n/a
38	chr11:107331110-107331160	LNCaP	prostate:	n/a
39	chr11:107331110-107331160	AG04449	skin:	fetal
40	chr11:107331110-107331160	AG09309	skin:	n/a
41	chr11:107331110-107331160	H1-hESC	embryonic stem cell:	embryo
42	chr11:107331110-107331160	ovcar-3	ovarian:	n/a
43	chr11:107331110-107331160	SKMC	muscle:	n/a
44	chr11:107331110-107331160	AoSMC	blood vessel:	n/a
45	chr11:107331110-107331160	RPTEC	kidney:	n/a
46	chr11:107331110-107331160	HIPEpiC	eye:	n/a
47	chr11:107331110-107331160	HPAEpiC	pulmonary alveolar:	n/a
48	chr11:107331110-107331160	A549	lung:	n/a
49	chr11:107331110-107331160	HCT-116	colon:	n/a
50	chr11:107331110-107331160	HL-60	blood:	n/a

No data

Variant related genes	Relation type
CWF19L2	TF binding region
CWF19L2	CpG island

Extended variants
information (count: 5 )
Associated
traits (count: 93 )

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs142348022	chr11:107331009-107331010	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
2	rs545234261	chr11:107331016-107331017	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
3	rs560718512	chr11:107331040-107331041	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
4	rs559071094	chr11:107331068-107331069	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
5	rs192426348	chr11:107331069-107331070	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:93)

Disease	PMID	Source
Medulloblastoma	21979893	CNVD
Gastric cancer	17908304	CNVD
Multiple myeloma	20724749	CNVD
Wilms tumour	21544195	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Intellectual disability	22102821	CNVD
Autism	22495311	CNVD
Acute myeloid leukemia	20729466	CNVD
Cancer	21637783	CNVD
Acute myeloid leukemia	16864856	CNVD
Chronic lymphocytic leukemia	21795749	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Neuroblastoma	21484798	CNVD
Ewing''s sarcoma	21437220	CNVD
Oral cancer	21386901	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	20837533	CNVD
Breast cancer	21264507	CNVD
Cervical cancer	21063398	CNVD
Glioblastoma multiforme	19960244	CNVD
Liposarcoma	21253554	CNVD
Neuroblastoma	18923524	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Neuroblastoma	17533364	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Glioblastoma multiforme	21080181	CNVD
Cancer	16751803	CNVD
Seminomas	18059402	CNVD
Cervical cancer	21062161	CNVD
Esophageal squamous carcinoma	18350619	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Neuroblastoma	18923191	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	22429812	CNVD
Breast cancer	16608533	CNVD
T-cell lymphomas	19863542	CNVD
Melanoma	18172304	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Basal cell lymphoma	17053054	CNVD
Hepatocellular carcinoma	16785998	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Acute myeloid leukemia	21251322	CNVD
Breast cancer	21858162	CNVD
Breast cancer	21785460	CNVD
Breast cancer	21958427	CNVD
Lung cancer	18438408	CNVD
Ewing''s sarcoma	17952124	CNVD
Breast cancer	17133270	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	17603634	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Basal cell lymphoma	16790693	CNVD
Chronic lymphocytic leukemia	21670202	CNVD
Breast cancer	21364760	CNVD
Ovarian clear cell carcinoma	19293255	CNVD
Mental retardation	19966786	CNVD
Non-small cell lung cancer	21829676	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Intracranial aneurysm	16715129	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Urothelial carcinoma	21177765	CNVD
Myelofibrosis	22110671	CNVD
Ovarian cancer	21720365	CNVD
Chronic lymphocytic leukemia	17805327	CNVD
Glioblastoma multiforme	22286061	CNVD
Breast cancer	16397240	CNVD
Chronic lymphocytic leukemia	18922857	CNVD
Neuroblastoma	17327916	CNVD
Esophageal adenocarcinoma	18519675	CNVD
Esophageal squamous carcinoma	17470683	CNVD
Mantle cell lymphoma	19029149	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Malignant melanoma	17260012	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Prostate cancer	16573809	CNVD
Prostate cancer	18632612	CNVD
Obesity	19966786	CNVD
Renal cell carcinoma	21668985	CNVD
Cancer	20164920	CNVD
Cancer	20164919	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:107330200-107330400	Enhancers	K562	blood

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