Variant report

Variant	esv3414821
Chromosome Location	chr6:77835783-77837881
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 111 )
Associated
traits (count: 99 )

Variant overlapped rSNPs/rCNVs (count:111 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs192858437	chr6:77835796-77835797	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs114537322	chr6:77835805-77835806	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs570397108	chr6:77835813-77835814	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs547544483	chr6:77835825-77835826	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs116517529	chr6:77835857-77835858	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs112689954	chr6:77835900-77835901	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs551658639	chr6:77835903-77835904	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs185772681	chr6:77835952-77835953	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs115962993	chr6:77836015-77836016	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs555126929	chr6:77836037-77836038	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs188626757	chr6:77836064-77836065	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs192723317	chr6:77836069-77836070	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs183599208	chr6:77836071-77836072	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs577568010	chr6:77836108-77836109	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs544674382	chr6:77836124-77836125	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs570878950	chr6:77836146-77836147	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs76843229	chr6:77836168-77836169	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs544054717	chr6:77836171-77836172	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs549838203	chr6:77836213-77836214	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs529473899	chr6:77836236-77836237	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs547878088	chr6:77836237-77836238	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs570935160	chr6:77836247-77836248	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs536446706	chr6:77836298-77836299	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs559544214	chr6:77836313-77836314	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs79815562	chr6:77836318-77836319	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs551478326	chr6:77836319-77836320	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs77528853	chr6:77836351-77836352	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs188266971	chr6:77836364-77836365	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs376136957	chr6:77836391-77836392	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs539460125	chr6:77836429-77836430	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs113324785	chr6:77836455-77836456	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs138926658	chr6:77836462-77836463	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs567140977	chr6:77836470-77836471	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs181413983	chr6:77836486-77836487	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs184113545	chr6:77836491-77836492	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs149012606	chr6:77836504-77836505	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs571245165	chr6:77836507-77836508	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs145863919	chr6:77836523-77836524	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs371600121	chr6:77836543-77836544	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs143644228	chr6:77836544-77836545	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs553513368	chr6:77836547-77836548	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs372756709	chr6:77836573-77836574	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs75783204	chr6:77836574-77836575	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs556971618	chr6:77836584-77836585	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs376493384	chr6:77836590-77836591	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs6918188	chr6:77836597-77836598	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs556053416	chr6:77836599-77836600	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs372892058	chr6:77836600-77836601	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs369020558	chr6:77836609-77836610	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs541264404	chr6:77836610-77836611	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:99)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Autism	22495311	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Gastric cancer	17908304	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Systemic lupus erythematosus	17503323	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Cancer	21637783	CNVD
Colorectal cancer	16272173	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
Lung cancer	18438408	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Prostate cancer	16573809	CNVD
Breast cancer	16272173	CNVD
small cell lung cancer	20016488	CNVD
Prostate cancer	18632612	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Urothelial carcinoma	18382360	CNVD
Ovarian neoplasms	16753589	CNVD
Hepatocellular carcinoma	16750200	CNVD
Wilms tumour	21544195	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Follicular lymphoma	17699855	CNVD
Breast cancer	17133270	CNVD
Leukemia	18688285	CNVD
Prostate cancer	19242612	CNVD
Developmental delay	21147756	CNVD
Glioma	21046410	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Zellweger syndrome	21572526	CNVD
Follicular lymphoma	20505157	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Lung adenocarcinoma	21935476	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Salivary gland tumor	18059337	CNVD
Lung cancer	16773561	CNVD
Glioblastoma multiforme	22286061	CNVD
Urothelial cell carcinoma	18451213	CNVD
Prostate cancer	16461572	CNVD
Mental retardation	21045960	CNVD
Obesity	21045960	CNVD
learning difficulties	21045960	CNVD
Prostate cancer	17245344	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Cancer	20164920	CNVD
Burkitt''s lymphoma	20823134	CNVD
Ductal carcinoma	22052326	CNVD

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:77832600-77847600	Weak transcription	Aorta	Aorta
2	chr6:77835000-77845400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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