Variant report

Variant	esv3415073
Chromosome Location	chr10:42659562-42659734
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 55 )

Variant overlapped rSNPs/rCNVs (count:24 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs75939781	chr10:42659567-42659568	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs189379594	chr10:42659575-42659576	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs553029332	chr10:42659582-42659583	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs79703914	chr10:42659636-42659637	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs76146611	chr10:42659637-42659638	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs201285822	chr10:42659645-42659646	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs535808477	chr10:42659654-42659655	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs199834840	chr10:42659655-42659656	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs145785804	chr10:42659656-42659657	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs148005793	chr10:42659660-42659661	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs74369507	chr10:42659662-42659663	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs140118484	chr10:42659663-42659664	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs200647973	chr10:42659664-42659665	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs555396775	chr10:42659666-42659667	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs575448930	chr10:42659668-42659669	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs75970923	chr10:42659678-42659679	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs145516106	chr10:42659683-42659684	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs544085663	chr10:42659685-42659686	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs369826319	chr10:42659686-42659687	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs373435698	chr10:42659703-42659704	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs74854009	chr10:42659706-42659707	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs564346576	chr10:42659714-42659715	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs377396021	chr10:42659725-42659726	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs577908570	chr10:42659732-42659733	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:55)

Disease	PMID	Source
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	21509527	CNVD
Autism	18414403	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Mental retardation	21062444	CNVD
Cancer	21183584	CNVD
T-cell lymphomas	19863542	CNVD
Testicular germ cell tumor	18059402	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Obesity	20622171	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Schizophrenia	22241247	CNVD
Intellectual disability	21811512	CNVD
Papillary thyroid carcinoma	21436994	CNVD
Hirschsprung''s Disease	21712996	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Obesity	21956041	CNVD
Lung cancer	21569311	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Renal cell carcinoma	18765545	CNVD
Breast cancer	21785460	CNVD
Autism	20531469	CNVD
small cell lung cancer	20016488	CNVD

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:42655800-42668200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
2	chr10:42657200-42661200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr10:42659400-42661200	Weak transcription	Brain Inferior Temporal Lobe	brain

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