Variant report

Variant	esv3415201
Chromosome Location	chr8:2879326-2879967
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MYOM2-14	chr8:2879062-2880003	NONHSAT124740

Extended variants
information (count: 41 )
Associated
traits (count: 124 )

Variant overlapped rSNPs/rCNVs (count:41 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs577072718	chr8:2879333-2879334	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
2	rs545871234	chr8:2879345-2879346	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
3	rs553086176	chr8:2879350-2879351	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
4	rs573017587	chr8:2879378-2879379	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
5	rs145413750	chr8:2879388-2879389	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
6	rs561939489	chr8:2879389-2879390	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
7	rs372714359	chr8:2879402-2879403	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
8	rs77085491	chr8:2879405-2879406	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
9	rs35923251	chr8:2879406-2879407	Enhancers Weak transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
10	rs533187981	chr8:2879442-2879443	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
11	rs546701330	chr8:2879458-2879459	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
12	rs370033666	chr8:2879463-2879464	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
13	rs74612718	chr8:2879470-2879471	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
14	rs116385283	chr8:2879485-2879486	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
15	rs548924431	chr8:2879497-2879498	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
16	rs112419803	chr8:2879552-2879553	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
17	rs201743916	chr8:2879559-2879560	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
18	rs537747966	chr8:2879576-2879577	Enhancers Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
19	rs201609853	chr8:2879632-2879633	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
20	rs607559	chr8:2879688-2879689	Weak transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
21	rs539611360	chr8:2879711-2879712	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
22	rs34486752	chr8:2879726-2879727	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
23	rs34392267	chr8:2879730-2879731	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
24	rs573240496	chr8:2879741-2879742	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
25	rs535585337	chr8:2879744-2879745	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
26	rs530908650	chr8:2879758-2879759	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
27	rs186186745	chr8:2879762-2879763	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
28	rs113064157	chr8:2879771-2879772	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
29	rs544493584	chr8:2879773-2879774	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
30	rs62487758	chr8:2879782-2879783	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
31	rs578009057	chr8:2879784-2879785	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
32	rs199565297	chr8:2879793-2879794	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
33	rs540398022	chr8:2879810-2879811	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
34	rs560400807	chr8:2879835-2879836	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
35	rs528975835	chr8:2879886-2879887	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
36	rs548855214	chr8:2879910-2879911	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
37	rs562485291	chr8:2879912-2879913	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
38	rs531242827	chr8:2879927-2879928	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
39	rs550978099	chr8:2879928-2879929	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
40	rs113253232	chr8:2879942-2879943	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
41	rs189868191	chr8:2879948-2879949	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a

Variant related diseases (count:124)

Disease	PMID	Source
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Prostate cancer	16573809	CNVD
Myelofibrosis	22110671	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
abnormal development	18461090	CNVD
Crohn''s disease	19220326	CNVD
Psoriasis	19220326	CNVD
Prostate cancer	21965145	CNVD
Prostate cancer	18515986	CNVD
Chronic obstructive pulmonary disease	20378733	CNVD
Autism	18414403	CNVD
Cancer	21183584	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Breast cancer	17603634	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Ovarian cancer	20844748	CNVD
Cervical cancer	17311676	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Non-syndromic sensorineural hearing loss	20606397	CNVD
Schizophrenia	20877625	CNVD
Disorders of sex development	21048976	CNVD
Colorectal cancer	16272173	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Breast cancer	17001317	CNVD
Thyroid cancer	19087340	CNVD
Multiple myeloma	16616336	CNVD
Hepatocellular carcinoma	22174799	CNVD
Heart disease	21282601	CNVD
T-cell lymphomas	19863542	CNVD
Ovarian cancer	22174824	CNVD
Colorectal cancer	21297112	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Salivary gland tumor	18059337	CNVD
Breast cancer	17133270	CNVD
Melanoma	18172304	CNVD
Medulloblastoma	21979893	CNVD
Chronic lymphocytic leukemia	18922857	CNVD
Breast cancer	17393978	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Breast cancer	20837533	CNVD
Squamous cell cancer	21044232	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Cancer	22429812	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Colorectal cancer	20709793	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Basal cell lymphoma	21115979	CNVD
Breast cancer	21264507	CNVD
Carcinoma ex pleomorphic adenoma	18828159	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Oral cancer	21386901	CNVD
Prostate cancer	21088497	CNVD
Breast cancer	20940404	CNVD
Colorectal cancer	19359472	CNVD
Embryonal rhabdomyosarcoma	16790082	CNVD
Gastric cancer	17167181	CNVD
Prostate cancer	16705090	CNVD
8p-syndrome	17576883	CNVD
Human rectal carcinomas	16397240	CNVD
Medulloblastoma	16968546	CNVD
Lung adenocarcinoma	19525976	CNVD
Lung cancer	19525976	CNVD
Prostate cancer	17245344	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Cancer	16751803	CNVD
Wilms tumour	21544195	CNVD
Gastric cancer	17908304	CNVD
Autism	19415332	CNVD
Malaria	21533027	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Esophageal cancer	21851588	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Breast cancer	21245420	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
Cancer	20164919	CNVD
Breast cancer	21785460	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Acute myeloid leukemia	20729466	CNVD
Ductal carcinoma	22052326	CNVD
Breast cancer	21509527	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Epilepsy	22083797	CNVD
Acute myeloid leukemia	21251322	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	21858162	CNVD
lymphocytic leukemia	21291569	CNVD
Liver carcinoma	19366792	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Autism	22495311	CNVD
Congenital diaphragmatic hernia	21064195	CNVD
Ovarian cancer	22355333	CNVD
Breast cancer	21364760	CNVD
Cancer	20164920	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Non-small cell lung cancer	21829676	CNVD
Esophageal squamous carcinoma	18405350	CNVD
Prostate cancer	17217626	CNVD
Developmental delay	19128483	CNVD
Neuroticism	17667963	CNVD
Leukoplakia	24403051	CNVD
Intellectual disability	22045946	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Breast cancer	16608533	CNVD
Seminomas	18059402	CNVD
Urothelial carcinoma	21177765	CNVD
Lung cancer	18438408	CNVD
small cell lung cancer	20016488	CNVD
Schizophrenia	19805367	CNVD
Colorectal cancer	16774939	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
Colorectal cancer	21645411	CNVD
Colorectal cancer	22014273	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:2858600-2887600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr8:2879200-2879600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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