Variant report

Variant	esv3415360
Chromosome Location	chr10:19774258-19774598
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 41 )

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs536708746	chr10:19774298-19774299	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs186797690	chr10:19774399-19774400	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs60658784	chr10:19774424-19774425	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
4	rs541346699	chr10:19774441-19774442	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs181349910	chr10:19774443-19774444	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs11010138	chr10:19774479-19774480	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
7	rs555155607	chr10:19774503-19774504	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs368129891	chr10:19774507-19774508	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs376582240	chr10:19774521-19774522	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs573777511	chr10:19774526-19774527	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs11010139	chr10:19774527-19774528	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
12	rs1971585	chr10:19774528-19774529	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
13	rs11010140	chr10:19774548-19774549	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
14	rs547736995	chr10:19774567-19774568	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs369549327	chr10:19774575-19774576	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs72217184	chr10:19774582-19774583	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs3045358	chr10:19774588-19774589	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:41)

Disease	PMID	Source
Medulloblastoma	16783165	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Intracranial aneurysm	16715129	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Myelofibrosis	22110671	CNVD
Multiple myeloma	16616336	CNVD
T-cell lymphomas	19863542	CNVD
Esophageal cancer	21851588	CNVD
small cell lung cancer	20016488	CNVD
Epilepsy	22083797	CNVD
Olfactory neuroblastoma	18408657	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	21364760	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:19740000-19781200	Weak transcription	Duodenum Mucosa	Duodenum
2	chr10:19751400-19777600	Weak transcription	Fetal Intestine Large	intestine
3	chr10:19756200-19777600	Weak transcription	Fetal Intestine Small	intestine

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