Variant report

Variant	esv3415652
Chromosome Location	chr5:178420896-178422994
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:16)
CpG islands
(count:550)
Chromatin interactive
region (count:1)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:16 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	E2F6	chr5:178421336-178422303	H1-hESC	embryonic stem cell:	n/a	n/a
2	E2F6	chr5:178421307-178422065	H1-hESC	embryonic stem cell:	n/a	n/a
3	GABPA	chr5:178422060-178422381	H1-hESC	embryonic stem cell:	n/a	n/a
4	GABPA	chr5:178421302-178422010	H1-hESC	embryonic stem cell:	n/a	n/a
5	GABPA	chr5:178421970-178422396	H1-hESC	embryonic stem cell:	n/a	chr5:178422023-178422032
6	JUND	chr5:178421646-178421696	H1-hESC	embryonic stem cell:	n/a	n/a
7	MAFK	chr5:178422479-178422486	H1-hESC	embryonic stem cell:	n/a	n/a
8	MAX	chr5:178422762-178423150	H1-hESC	embryonic stem cell:	n/a	n/a
9	MAX	chr5:178421255-178421992	H1-hESC	embryonic stem cell:	n/a	n/a
10	MAX	chr5:178421572-178421798	H1-hESC	embryonic stem cell:	n/a	n/a
11	MAX	chr5:178421216-178422044	H1-hESC	embryonic stem cell:	n/a	chr5:178421994-178422004
12	RAD21	chr5:178422713-178422905	H1-hESC	embryonic stem cell:	n/a	chr5:178422789-178422802 chr5:178422791-178422801 chr5:178422791-178422803
13	SIN3A	chr5:178421537-178421738	H1-hESC	embryonic stem cell:	n/a	n/a
14	TEAD4	chr5:178421507-178421798	H1-hESC	embryonic stem cell:	n/a	n/a
15	ZNF143	chr5:178422155-178422312	H1-hESC	embryonic stem cell:	n/a	n/a
16	ZNF143	chr5:178422553-178422740	H1-hESC	embryonic stem cell:	n/a	n/a

(count:550 , 50 per page) page: 1 2 3 4 5 6 7 ... 11

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr5:178422260-178422310	T-47D	breast:	n/a
2	chr5:178422260-178422310	T-47D	breast:	n/a
3	chr5:178422140-178422190	HMEC	breast:	n/a
4	chr5:178422071-178422121	HPAEpiC	pulmonary alveolar:	n/a
5	chr5:178422140-178422190	NT2-D1	testis:	n/a
6	chr5:178422128-178422178	HMEC	breast:	n/a
7	chr5:178422260-178422310	HRPEpiC	eye:	n/a
8	chr5:178422260-178422310	H1-hESC	embryonic stem cell:	embryo
9	chr5:178421314-178421364	ovcar-3	ovarian:	n/a
10	chr5:178421711-178421761	A549	lung:	n/a
11	chr5:178422415-178422465	AG09319	gingival:	n/a
12	chr5:178421711-178421761	HPAEpiC	pulmonary alveolar:	n/a
13	chr5:178422415-178422465	SAEC	small airway:	n/a
14	chr5:178422128-178422178	HL-60	blood:	n/a
15	chr5:178420865-178420915	GM19239	blood:	n/a
16	chr5:178422128-178422178	Hela-S3	cervix:	n/a
17	chr5:178422415-178422465	HepG2	liver:	n/a
18	chr5:178422128-178422178	HNPCEpiC	eye:	n/a
19	chr5:178420865-178420915	SK-N-SH	brain:	n/a
20	chr5:178420865-178420915	HCM	heart:	n/a
21	chr5:178422071-178422121	AG09309	skin:	n/a
22	chr5:178422128-178422178	AG04449	skin:	fetal
23	chr5:178422071-178422121	NB4	blood:	n/a
24	chr5:178421711-178421761	Jurkat	blood:	n/a
25	chr5:178421314-178421364	SKMC	muscle:	n/a
26	chr5:178422244-178422294	K562	blood:	n/a
27	chr5:178420865-178420915	PFSK-1	brain:	n/a
28	chr5:178421314-178421364	BE2_C	brain:	n/a
29	chr5:178422415-178422465	AoSMC	blood vessel:	n/a
30	chr5:178421711-178421761	IMR90	lung:	fetal
31	chr5:178421314-178421364	HCF	heart:	n/a
32	chr5:178422260-178422310	BJ	skin:	n/a
33	chr5:178422128-178422178	NHDF-neo	bronchial:	n/a
34	chr5:178422071-178422121	IMR90	lung:	fetal
35	chr5:178421711-178421761	AG10803	skin:	n/a
36	chr5:178422260-178422310	GM12878	blood:	n/a
37	chr5:178422260-178422310	HCF	heart:	n/a
38	chr5:178422415-178422465	GM12892	blood:	n/a
39	chr5:178422140-178422190	H1-hESC	embryonic stem cell:	embryo
40	chr5:178422128-178422178	PFSK-1	brain:	n/a
41	chr5:178421314-178421364	HPAEpiC	pulmonary alveolar:	n/a
42	chr5:178422071-178422121	NHDF-neo	bronchial:	n/a
43	chr5:178420865-178420915	MCF10A-Er-Src	breast:	n/a
44	chr5:178422244-178422294	HCF	heart:	n/a
45	chr5:178422128-178422178	AG10803	skin:	n/a
46	chr5:178422260-178422310	A549	lung:	n/a
47	chr5:178420865-178420915	HRCEpiC	kidney:	n/a
48	chr5:178422071-178422121	HNPCEpiC	eye:	n/a
49	chr5:178422260-178422310	HEEpiC	esophagus:	n/a
50	chr5:178421314-178421364	HRE	kidney:	n/a

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:178415802..178417624-chr5:178422494..178424100,2	MCF-7	breast:

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-GRM6-2	chr5:178422279-178422330	NONHSAT105569
2	lnc-GRM6-2	chr5:178422897-178423207	NONHSAT105569

No data

Variant related genes	Relation type
GRM6	TF binding region
GRM6	CpG island
ENSG00000113262	chromatin interactions

Extended variants
information (count: 79 )
Associated
traits (count: 102 )

Variant overlapped rSNPs/rCNVs (count:79 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs147894184	chr5:178420947-178420948	Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs200513815	chr5:178420954-178420955	Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs6873845	chr5:178421019-178421020	Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
4	rs113655909	chr5:178421022-178421023	Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs139838192	chr5:178421062-178421063	Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs72816676	chr5:178421064-178421065	Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs2645331	chr5:178421157-178421158	Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
8	rs183807567	chr5:178421159-178421160	Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs570036127	chr5:178421184-178421185	Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs537064364	chr5:178421197-178421198	Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs549415287	chr5:178421205-178421206	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs567656451	chr5:178421229-178421230	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs534812261	chr5:178421237-178421238	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs550279655	chr5:178421244-178421245	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs386695560	chr5:178421269-178421270	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs538581361	chr5:178421328-178421329	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs2645330	chr5:178421351-178421352	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
18	rs62638203	chr5:178421376-178421377	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
19	rs113506152	chr5:178421392-178421393	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs560996269	chr5:178421415-178421416	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs572890701	chr5:178421422-178421423	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs541607453	chr5:178421432-178421433	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs560013977	chr5:178421481-178421482	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs533585561	chr5:178421483-178421484	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs62638202	chr5:178421498-178421499	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs62638201	chr5:178421594-178421595	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs62638200	chr5:178421610-178421611	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
28	rs62638199	chr5:178421685-178421686	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
29	rs563976478	chr5:178421769-178421770	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
30	rs2645329	chr5:178421770-178421771	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Enhancers Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
31	rs62638198	chr5:178421774-178421775	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
32	rs62638197	chr5:178421809-178421810	Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS	n/a	n/a	Overlapped CNVs	n/a
33	rs1076877	chr5:178421835-178421836	Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS	n/a	n/a	Overlapped CNVs	n/a
34	rs1076876	chr5:178421859-178421860	Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS	n/a	n/a	Overlapped CNVs	n/a
35	rs62638196	chr5:178421863-178421864	Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS	n/a	n/a	Overlapped CNVs	n/a
36	rs281865185	chr5:178421870-178421871	Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS	n/a	n/a	Overlapped CNVs	n/a
37	rs191142743	chr5:178421874-178421875	Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS	n/a	n/a	Overlapped CNVs	n/a
38	rs62642053	chr5:178421927-178421928	Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS	n/a	n/a	Overlapped CNVs	n/a
39	rs368564120	chr5:178422048-178422049	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
40	rs533490633	chr5:178422060-178422061	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
41	rs534835926	chr5:178422061-178422062	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
42	rs546373951	chr5:178422062-178422063	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
43	rs571074330	chr5:178422066-178422067	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
44	rs372633199	chr5:178422070-178422071	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
45	rs1078978	chr5:178422083-178422084	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
46	rs556788861	chr5:178422107-178422108	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
47	rs569064932	chr5:178422122-178422123	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
48	rs536232808	chr5:178422144-178422145	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS	TF binding region CpG island	1 gene(s)	Overlapped CNVs	n/a
49	rs183695858	chr5:178422181-178422182	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS	TF binding region CpG island	1 gene(s)	Overlapped CNVs	n/a
50	rs141553845	chr5:178422205-178422206	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:102)

Disease	PMID	Source
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Medulloblastoma	21979893	CNVD
Phyllodes tumor	17334353	CNVD
Malaria	21533027	CNVD
Renal cell carcinoma	19461508	CNVD
Cancer	20164919	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Cancer	16751803	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Glioma	20126413	CNVD
Cancer	22429812	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Liposarcoma	21253554	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Leukemia	17361228	CNVD
Myelodysplastic syndrome	18508791	CNVD
5q-syndrome	17576883	CNVD
Gastric cancer	17908304	CNVD
Lung cancer	16740712	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Urothelial carcinoma	21177765	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Barrett''s syndrome	19417022	CNVD
Thyroid cancer	19087340	CNVD
Acute myeloid leukemia	20729466	CNVD
lymphocytic leukemia	21291569	CNVD
Multiple myeloma	17550852	CNVD
Salivary gland tumor	18059337	CNVD
Renal cell carcinoma	19377443	CNVD
Lung cancer	18438408	CNVD
Gastrointestinal stromal cancer	19259404	CNVD
Renal cell carcinoma	18592004	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Myofibroblastic sarcoma	19369631	CNVD
Embryonal rhabdomyosarcoma	16790082	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Prostate cancer	18632612	CNVD
epilepsy	18472482	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Sotos syndrome	21572526	CNVD
T-cell acute lymphoblastic leukemia	20065082	CNVD
Sotos syndrome	17561922	CNVD
Sotos syndrome	16773131	CNVD
Mental retardation	16773131	CNVD
Sotos syndrome	22470819	CNVD
Non-syndromic sensorineural hearing loss	20606397	CNVD
Acute myeloid leukemia	18000384	CNVD
Sudden cardiac death	19188705	CNVD
Basal cell lymphoma	16317097	CNVD
Chordoma	18071362	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Olfactory neuroblastoma	18408657	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
abnormal development	18461090	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Lung cancer	17297452	CNVD
Cancer	20164920	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	21509527	CNVD
Breast cancer	21804112	CNVD
Myelofibrosis	22110671	CNVD
Sotos syndrome	22283845	CNVD
Breast cancer	16272173	CNVD
Sotos syndrome	20503325	CNVD
Lung adenocarcinoma	17086460	CNVD
Congenital Hypertrichosis Syndrome	21636067	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
Breast cancer	19181860	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Ehlers-danlos syndrome	17576883	CNVD
Lung cancer	17086460	CNVD
Autism	19246517	CNVD
Basal cell lymphoma	19029149	CNVD
Diffuse large b-cell lymphoma	19029149	CNVD
early-passage human iPS cells	21368824	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:178417600-178421400	Weak transcription	Right Atrium	heart
2	chr5:178418000-178421000	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr5:178419800-178421400	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr5:178419800-178421800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
5	chr5:178420200-178421400	Enhancers	Primary hematopoietic stem cells	blood
6	chr5:178420600-178421000	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr5:178421000-178421200	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr5:178421000-178421200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr5:178421000-178421400	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
10	chr5:178421000-178421400	Bivalent Enhancer	Fetal Brain Male	brain
11	chr5:178421000-178421400	Bivalent Enhancer	Fetal Stomach	stomach
12	chr5:178421000-178421600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
13	chr5:178421200-178421400	Bivalent Enhancer	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr5:178421200-178421400	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
15	chr5:178421200-178421400	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr5:178421200-178421400	Flanking Bivalent TSS/Enh	Fetal Brain Female	brain
17	chr5:178421200-178421400	Bivalent Enhancer	Fetal Lung	lung
18	chr5:178421200-178421600	ZNF genes & repeats	Spleen	Spleen
19	chr5:178421200-178421800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
20	chr5:178421200-178421800	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr5:178421200-178421800	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr5:178421200-178422200	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
23	chr5:178421200-178422200	Bivalent/Poised TSS	Brain Germinal Matrix	brain
24	chr5:178421200-178422400	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
25	chr5:178421200-178422600	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
26	chr5:178421200-178422800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
27	chr5:178421200-178422800	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
28	chr5:178421400-178421600	Flanking Bivalent TSS/Enh	ES-WA7 Cell Line	embryonic stem cell
29	chr5:178421400-178421600	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr5:178421400-178421600	Flanking Bivalent TSS/Enh	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr5:178421400-178421600	Flanking Bivalent TSS/Enh	ES-UCSF4 Cell Line	embryonic stem cell
32	chr5:178421400-178421600	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
33	chr5:178421400-178421600	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr5:178421400-178421600	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
35	chr5:178421400-178421600	Bivalent Enhancer	Psoas Muscle	Psoas
36	chr5:178421400-178421800	Bivalent/Poised TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr5:178421400-178421800	Flanking Bivalent TSS/Enh	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr5:178421400-178421800	Flanking Active TSS	Primary hematopoietic stem cells	blood
39	chr5:178421400-178421800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr5:178421400-178421800	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
41	chr5:178421400-178421800	Flanking Bivalent TSS/Enh	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr5:178421400-178421800	Enhancers	Esophagus	oesophagus
43	chr5:178421400-178422000	Flanking Bivalent TSS/Enh	Right Ventricle	heart
44	chr5:178421400-178422200	Bivalent Enhancer	Brain Inferior Temporal Lobe	brain
45	chr5:178421400-178422400	Bivalent/Poised TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr5:178421400-178422400	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr5:178421400-178422400	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
48	chr5:178421400-178422400	Bivalent Enhancer	Lung	lung
49	chr5:178421400-178422400	Enhancers	Right Atrium	heart
50	chr5:178421400-178422400	Bivalent Enhancer	Stomach Smooth Muscle	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links