Variant report

Variant	esv3416049
Chromosome Location	chr15:87644048-87647746
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 159 )
Associated
traits (count: 61 )

Variant overlapped rSNPs/rCNVs (count:159 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs76727111	chr15:87644097-87644098	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs567160082	chr15:87644104-87644105	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs527660871	chr15:87644107-87644108	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs143436916	chr15:87644115-87644116	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs57602445	chr15:87644138-87644139	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs34800936	chr15:87644139-87644140	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs137950614	chr15:87644152-87644153	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs35636494	chr15:87644179-87644180	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs191352938	chr15:87644196-87644197	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs542123213	chr15:87644202-87644203	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs560144918	chr15:87644244-87644245	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs546522090	chr15:87644270-87644271	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs182772087	chr15:87644289-87644290	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs570996052	chr15:87644293-87644294	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs531827768	chr15:87644329-87644330	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs187243029	chr15:87644363-87644364	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs568492838	chr15:87644365-87644366	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs535450585	chr15:87644387-87644388	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs191278726	chr15:87644414-87644415	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs377205325	chr15:87644439-87644440	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs540074153	chr15:87644464-87644465	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs557923039	chr15:87644534-87644535	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs183838879	chr15:87644549-87644550	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs187713273	chr15:87644573-87644574	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs555805389	chr15:87644621-87644622	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs574381319	chr15:87644684-87644685	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs541411476	chr15:87644724-87644725	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs7496783	chr15:87644726-87644727	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs572235909	chr15:87644730-87644731	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs546056636	chr15:87644746-87644747	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs564253887	chr15:87644752-87644753	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs193151332	chr15:87644768-87644769	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs550315995	chr15:87644794-87644795	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs373183452	chr15:87644808-87644809	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs185255899	chr15:87644814-87644815	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs556287229	chr15:87644821-87644822	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs201711780	chr15:87644837-87644838	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs142453124	chr15:87644838-87644839	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs114656672	chr15:87644851-87644852	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs539722010	chr15:87644877-87644878	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs146376244	chr15:87644904-87644905	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs568702818	chr15:87644938-87644939	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs569930519	chr15:87644967-87644968	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs537208380	chr15:87645012-87645013	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs138374401	chr15:87645033-87645034	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs142021107	chr15:87645034-87645035	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs536457226	chr15:87645060-87645061	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs554521007	chr15:87645062-87645063	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs573113490	chr15:87645067-87645068	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs190129438	chr15:87645165-87645166	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:61)

Disease	PMID	Source
Ewing''s sarcoma	21437220	CNVD
Schizophrenia	19415332	CNVD
Breast cancer	22522925	CNVD
Wilms tumour	21544195	CNVD
cataract	16735990	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Medulloblastoma	21979893	CNVD
spastic paraplegia with thinning of corpus callosum	19105190	CNVD
Schizophrenia	21324950	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Disease	21824424	CNVD
Melanoma	18172304	CNVD
Gastric cancer	17167181	CNVD
Neuroblastoma	19435921	CNVD
Colorectal cancer	19359472	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Colorectal cancer	16272173	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Multiple myeloma	17550852	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute myeloid leukemia	20729466	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Multiple myeloma	20724749	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Prostate cancer	18632612	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Cancer	16751803	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Autism	17322880	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Lung cancer	18438408	CNVD
Acute myeloid leukemia	16864856	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
small cell lung cancer	20016488	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Colorectal cancer	16774939	CNVD
Myofibroblastic sarcoma	19369631	CNVD
Embryonal rhabdomyosarcoma	16790082	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Sudden cardiac death	19188705	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	17133270	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Non-muscle invasive bladder neoplasm	19445696	CNVD
Breast cancer	21364760	CNVD
Cancer	21129771	CNVD
Myelofibrosis	22110671	CNVD
Spondylocostal dysostosis	21085971	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Epilepsy	19486360	CNVD
Breast cancer	21509527	CNVD
Acute myeloid leukemia	17237825	CNVD
Pancreatic cancer	17952125	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:87644000-87649400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr15:87647600-87647800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr15:87647600-87648000	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived

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