Variant report

Variant	esv3416796
Chromosome Location	chr19:24542672-24552868
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 853 )
Associated
traits (count: 39 )

Variant overlapped rSNPs/rCNVs (count:853 , 50 per page) page: 1 2 3 4 5 6 7 ... 18

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs552394838	chr19:24542673-24542674	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs570694444	chr19:24542685-24542686	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs537728290	chr19:24542692-24542693	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs191588928	chr19:24542705-24542706	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs556396525	chr19:24542731-24542732	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs568281436	chr19:24542740-24542741	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs536606206	chr19:24542741-24542742	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs554544021	chr19:24542743-24542744	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs572995074	chr19:24542747-24542748	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs184970130	chr19:24542756-24542757	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs558711288	chr19:24542764-24542765	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs577394903	chr19:24542801-24542802	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs544500495	chr19:24542804-24542805	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs563161299	chr19:24542854-24542855	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs575036774	chr19:24542889-24542890	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs541806755	chr19:24542896-24542897	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs147939794	chr19:24542897-24542898	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs527365387	chr19:24542905-24542906	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs552331802	chr19:24542938-24542939	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs141836567	chr19:24542948-24542949	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs531502117	chr19:24542949-24542950	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs147107679	chr19:24542950-24542951	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs568296686	chr19:24542951-24542952	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs1598617	chr19:24542959-24542960	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs535426840	chr19:24542961-24542962	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs548165824	chr19:24542965-24542966	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs566561473	chr19:24542976-24542977	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs534008019	chr19:24543012-24543013	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs558597975	chr19:24543017-24543018	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs577282037	chr19:24543037-24543038	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs538390893	chr19:24543045-24543046	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs140661344	chr19:24543063-24543064	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs575068225	chr19:24543072-24543073	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs542574640	chr19:24543084-24543085	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs1598616	chr19:24543098-24543099	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs560172784	chr19:24543111-24543112	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs572045223	chr19:24543132-24543133	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs545831914	chr19:24543145-24543146	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs564131686	chr19:24543154-24543155	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs531307806	chr19:24543157-24543158	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs187473930	chr19:24543165-24543166	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs561772725	chr19:24543173-24543174	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs59947663	chr19:24543174-24543175	ZNF genes & repeats Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
44	rs529168498	chr19:24543181-24543182	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs369016724	chr19:24543194-24543195	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs547316198	chr19:24543196-24543197	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs1598615	chr19:24543199-24543200	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs112253024	chr19:24543203-24543204	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs565659381	chr19:24543209-24543210	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs533897760	chr19:24543236-24543237	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:39)

Disease	PMID	Source
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Prostate cancer	16573809	CNVD
Chordoma	18071362	CNVD
Metanephric adenoma	20802469	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Oligodendroglial tumors	17285580	CNVD
Oral cancer	21386901	CNVD
ovarian endometriomas	16273235	CNVD
Endometrial cancer	22040021	CNVD
Acute myeloid leukemia	16864856	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	17387387	CNVD
Cervical cancer	21063398	CNVD
Myelodysplastic syndrome	17634407	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Retinoblastoma	21504564	CNVD
Ovarian cancer	21720365	CNVD
Cancer	20164919	CNVD
Thoracic aortic aneurysm	21092924	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Prostate cancer	18632612	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Myelofibrosis	22110671	CNVD
Cancer	21183584	CNVD
Ductal carcinoma	22052326	CNVD
Cancer	20164920	CNVD
small cell lung cancer	20016488	CNVD
Renal cell carcinoma	18194544	CNVD
Pleomorphic liposarcoma	18784837	CNVD
Autism	19287141	CNVD
Lung cancer	18438408	CNVD

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:24507800-24577200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr19:24508000-24573400	ZNF genes & repeats	Liver	Liver
3	chr19:24508800-24569000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr19:24509200-24570800	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
5	chr19:24513000-24571800	ZNF genes & repeats	Adipose Nuclei	Adipose
6	chr19:24522000-24576600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
7	chr19:24525400-24577200	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
8	chr19:24533400-24556800	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
9	chr19:24533800-24545400	ZNF genes & repeats	Psoas Muscle	Psoas
10	chr19:24540800-24543200	ZNF genes & repeats	Dnd41	blood
11	chr19:24540800-24543600	Weak transcription	Aorta	Aorta
12	chr19:24541400-24544600	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
13	chr19:24543600-24543800	ZNF genes & repeats	Aorta	Aorta
14	chr19:24543800-24544800	Weak transcription	Aorta	Aorta
15	chr19:24544800-24545200	Active TSS	Aorta	Aorta
16	chr19:24545000-24546200	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
17	chr19:24545200-24547400	Weak transcription	Aorta	Aorta
18	chr19:24545600-24546600	Active TSS	Right Atrium	heart
19	chr19:24547400-24548600	ZNF genes & repeats	Aorta	Aorta
20	chr19:24548400-24559800	ZNF genes & repeats	Psoas Muscle	Psoas
21	chr19:24548600-24552000	Weak transcription	Aorta	Aorta
22	chr19:24550600-24551200	Active TSS	Right Atrium	heart
23	chr19:24551200-24553200	Weak transcription	Right Atrium	heart
24	chr19:24551400-24556600	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
25	chr19:24551600-24552000	ZNF genes & repeats	Brain Substantia Nigra	brain
26	chr19:24552000-24553200	Active TSS	Aorta	Aorta

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