Variant report

Variant	esv3417318
Chromosome Location	chrX:124455153-124456530
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-STAG2-2	chrX:124453629-124456969	XLOC_008063

Extended variants
information (count: 38 )
Associated
traits (count: 43 )

Variant overlapped rSNPs/rCNVs (count:38 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs189499649	chrX:124455170-124455171	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
2	rs367608564	chrX:124455259-124455260	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
3	rs370930316	chrX:124455307-124455308	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
4	rs182081365	chrX:124455321-124455322	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
5	rs374579224	chrX:124455508-124455509	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
6	rs3135231	chrX:124455511-124455512	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
7	rs145777792	chrX:124455537-124455538	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
8	rs185066247	chrX:124455543-124455544	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
9	rs189534278	chrX:124455544-124455545	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
10	rs368215567	chrX:124455559-124455560	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
11	rs371219803	chrX:124455568-124455569	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
12	rs373947133	chrX:124455571-124455572	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
13	rs368158488	chrX:124455574-124455575	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
14	rs181806419	chrX:124455646-124455647	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
15	rs3135232	chrX:124455666-124455667	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
16	rs3135233	chrX:124455688-124455689	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
17	rs113331732	chrX:124455729-124455730	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
18	rs3135234	chrX:124455732-124455733	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
19	rs112184465	chrX:124455748-124455749	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
20	rs112537380	chrX:124455751-124455752	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
21	rs3135235	chrX:124455755-124455756	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
22	rs111226613	chrX:124455814-124455815	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
23	rs3135236	chrX:124455824-124455825	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
24	rs55827109	chrX:124455873-124455874	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
25	rs56129157	chrX:124455919-124455920	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
26	rs28720955	chrX:124455964-124455965	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
27	rs6637308	chrX:124456018-124456019	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
28	rs3126304	chrX:124456066-124456067	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
29	rs190033534	chrX:124456075-124456076	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
30	rs5930176	chrX:124456095-124456096	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
31	rs371395695	chrX:124456218-124456219	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
32	rs5976647	chrX:124456219-124456220	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
33	rs111499066	chrX:124456270-124456271	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
34	rs150236967	chrX:124456363-124456364	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
35	rs3135237	chrX:124456399-124456400	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
36	rs180827484	chrX:124456410-124456411	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
37	rs6637319	chrX:124456437-124456438	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
38	rs28657589	chrX:124456452-124456453	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a

Variant related diseases (count:43)

Disease	PMID	Source
Neuroblastoma	18923191	CNVD
Burkitt''s lymphoma	20823134	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
Astrocytoma	17387387	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Metanephric adenoma	20802469	CNVD
Medulloblastoma	21979893	CNVD
Schizophrenia	23904455	CNVD
Olfactory neuroblastoma	18408657	CNVD
infertile	22614455	CNVD
Cancer	20581869	CNVD
Multiple myeloma	20724749	CNVD
Non-syndromic sensorineural hearing loss	18496225	CNVD
Prostate cancer	18632612	CNVD
Lung cancer	18438408	CNVD
Autism	22495311	CNVD
lymphocytic leukemia	21291569	CNVD
Testicular germ cell tumor	18059402	CNVD
Testicular cancer	18059402	CNVD
Seminomas	18059402	CNVD
Glioblastoma multiforme	19960244	CNVD
Endometrial cancer	22040021	CNVD
Burkitt''s lymphoma	18698080	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	17387387	CNVD
Cancer	22429812	CNVD
Cancer	16751803	CNVD
small cell lung cancer	20016488	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Astrocytoma	22246337	CNVD
Congenital Hypertrichosis Syndrome	21636067	CNVD
Congenital abnormalities	21549014	CNVD
Developmental delay	21549014	CNVD
Mental retardation	21549014	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Breast cancer	21364760	CNVD
Bladder cancer	24270882	CNVD
Breast cancer	17603634	CNVD
Melanoma	20877625	CNVD
Ovarian cancer	21720365	CNVD
abnormal development	18461090	CNVD
Alcoholism	21790672	CNVD

Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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