Variant report
| Variant | esv3417435 |
|---|---|
| Chromosome Location | chr10:37644146-37650344 |
| allele | n/a |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | rs568547655 | chr10:37646610-37646611 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 2 | rs7909101 | chr10:37646669-37646670 | ZNF genes & repeats | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 3 | rs13377062 | chr10:37646676-37646677 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 4 | rs565385939 | chr10:37646684-37646685 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 5 | rs374152030 | chr10:37646685-37646686 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 6 | rs182246682 | chr10:37646703-37646704 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 7 | rs371617277 | chr10:37646704-37646705 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 8 | rs552540480 | chr10:37646707-37646708 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 9 | rs566177940 | chr10:37646795-37646796 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 10 | rs535086805 | chr10:37646813-37646814 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 11 | rs555129387 | chr10:37646854-37646855 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 12 | rs367704791 | chr10:37646901-37646902 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 13 | rs575314768 | chr10:37646910-37646911 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 14 | rs367645798 | chr10:37646911-37646912 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 15 | rs377234859 | chr10:37646921-37646922 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 16 | rs537618139 | chr10:37646945-37646946 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 17 | rs370149343 | chr10:37646970-37646971 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 18 | rs184910809 | chr10:37646989-37646990 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
| 19 | rs190897720 | chr10:37646999-37647000 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
Variant related diseases (count:43)
| Disease | PMID | Source |
|---|---|---|
| Endometrioid adenocarcinoma | 16974079 | CNVD |
| Breast cancer | 17603634 | CNVD |
| Endometrial cancer | 22040021 | CNVD |
| Glioblastoma multiforme | 21080181 | CNVD |
| Breast cancer | 21264507 | CNVD |
| Esophageal squamous carcinoma | 21637470 | CNVD |
| Phyllodes tumor | 17334353 | CNVD |
| Acute lymphoblastic leukemia | 17690704 | CNVD |
| Pancreatic endocrine tumor | 17639061 | CNVD |
| Gastric cancer | 17908304 | CNVD |
| Chordoma | 21602918 | CNVD |
| Ewing''s sarcoma | 21437220 | CNVD |
| Medulloblastoma | 21979893 | CNVD |
| Melanoma | 18172304 | CNVD |
| Pleomorphic xanthoastrocytoma | 20730472 | CNVD |
| Lung cancer | 18438408 | CNVD |
| Thoracic aortic aneurysm | 21092924 | CNVD |
| Ewing''s sarcoma | 17952124 | CNVD |
| Oral cancer | 21386901 | CNVD |
| T-cell prolymphocytic leukemia | 19278963 | CNVD |
| Hodgkin''s lymphoma | 17606441 | CNVD |
| Acute lymphoblastic leukemia | 20435627 | CNVD |
| Breast cancer | 21858162 | CNVD |
| Acute lymphoblastic leukemia | 20724749 | CNVD |
| Autism | 22495311 | CNVD |
| T-cell lymphomas | 19863542 | CNVD |
| Esophageal cancer | 21851588 | CNVD |
| Behavioral abnormalities | 21522184 | CNVD |
| Dysmorphic features | 21522184 | CNVD |
| Oral squamous cell carcinoma | 17134496 | CNVD |
| Bethlem myopathy | 20302629 | CNVD |
| Non-muscle invasive bladder neoplasm | 19445696 | CNVD |
| Glioblastoma multiforme | 22286061 | CNVD |
| small cell lung cancer | 20016488 | CNVD |
| Prostate cancer | 18632612 | CNVD |
| Hepatocellular carcinoma | 16785998 | CNVD |
| Myelofibrosis | 22110671 | CNVD |
| Barrett''s adenocarcinoma | 18663352 | CNVD |
| Breast cancer | 21364760 | CNVD |
| Non-syndromic sensorineural hearing loss | 17122850 | CNVD |
| Bipolar disorder | 19114987 | CNVD |
| Breast cancer | 22522925 | CNVD |
| Lung cancer | 21569311 | CNVD |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:37646600-37647000 | ZNF genes & repeats | Pancreas | Pancrea |
