Variant report

Variant	esv3418471
Chromosome Location	chr10:4537302-4539400
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 154 )
Associated
traits (count: 55 )

Variant overlapped rSNPs/rCNVs (count:154 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs557103163	chr10:4537303-4537304	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs569083928	chr10:4537369-4537370	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs539677329	chr10:4537393-4537394	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs560138235	chr10:4537490-4537491	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs576869639	chr10:4537525-4537526	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs540982494	chr10:4537533-4537534	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs552712806	chr10:4537540-4537541	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs574649860	chr10:4537595-4537596	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs370009371	chr10:4537598-4537599	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs143412321	chr10:4537605-4537606	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs530716079	chr10:4537632-4537633	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs546068299	chr10:4537674-4537675	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs574504857	chr10:4537688-4537689	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs527289206	chr10:4537724-4537725	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs528585149	chr10:4537739-4537740	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs546938502	chr10:4537747-4537748	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs4881323	chr10:4537753-4537754	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
18	rs377097128	chr10:4537766-4537767	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs529273966	chr10:4537809-4537810	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs537104267	chr10:4537829-4537830	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs567264797	chr10:4537834-4537835	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs569247983	chr10:4537863-4537864	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs539640815	chr10:4537897-4537898	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs551569839	chr10:4537906-4537907	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs369909503	chr10:4537929-4537930	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs570495235	chr10:4537950-4537951	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs534444479	chr10:4537961-4537962	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs10904270	chr10:4537982-4537983	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
29	rs567574559	chr10:4538034-4538035	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs574336879	chr10:4538050-4538051	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs71391950	chr10:4538058-4538059	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs200981912	chr10:4538059-4538060	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs201872811	chr10:4538060-4538061	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs200559516	chr10:4538062-4538063	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs66539759	chr10:4538071-4538072	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs11252565	chr10:4538073-4538074	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs574742245	chr10:4538076-4538077	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs535484993	chr10:4538077-4538078	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs369293335	chr10:4538085-4538086	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs57125044	chr10:4538089-4538090	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs12778853	chr10:4538110-4538111	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs199710329	chr10:4538111-4538112	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs370758962	chr10:4538112-4538113	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs549591871	chr10:4538128-4538129	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs57015153	chr10:4538137-4538138	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs376763902	chr10:4538152-4538153	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs370513909	chr10:4538153-4538154	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs187608961	chr10:4538176-4538177	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs564141037	chr10:4538179-4538180	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs369915500	chr10:4538191-4538192	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:55)

Disease	PMID	Source
Sudden cardiac death	19188705	CNVD
Digeorge syndrome	22283845	CNVD
Cancer	21129771	CNVD
Colorectal cancer	20709793	CNVD
Wilms tumour	19047088	CNVD
Hepatocellular carcinoma	16750200	CNVD
Acute myeloid leukemia	16864856	CNVD
Cancer	21183584	CNVD
Barakat syndrome	22470819	CNVD
Melanoma	18172304	CNVD
Ovarian cancer	21720365	CNVD
Autism	18414403	CNVD
Malignant melanoma	18718029	CNVD
Breast cancer	22032731	CNVD
Medulloblastoma	16783165	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Melanoma	17363583	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
Breast cancer	21785460	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Breast cancer	21509527	CNVD
Prostate cancer	18632612	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Breast cancer	21364760	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Renal cell carcinoma	18765545	CNVD
lymphocytic leukemia	21291569	CNVD
Urothelial cell carcinoma	18451213	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	22286061	CNVD
Myxofibrosarcoma	16751306	CNVD
Non-muscle invasive bladder neoplasm	19445696	CNVD
Breast cancer	21611746	CNVD

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4537200-4539400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr10:4539400-4540600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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