Variant report

Variant	esv3418573
Chromosome Location	chr4:159024052-159029950
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:159017530..159020333-chr4:159021584..159024507,2	MCF-7	breast:

Extended variants
information (count: 307 )
Associated
traits (count: 75 )

Variant overlapped rSNPs/rCNVs (count:307 , 50 per page) page: 1 2 3 4 5 6 7

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs115310546	chr4:159024110-159024111	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs180760220	chr4:159024119-159024120	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs550879489	chr4:159024125-159024126	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs377227448	chr4:159024127-159024128	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs368924525	chr4:159024128-159024129	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs185203655	chr4:159024170-159024171	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs190067328	chr4:159024175-159024176	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs370228599	chr4:159024217-159024218	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs143654119	chr4:159024239-159024240	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs372821523	chr4:159024305-159024306	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs550156744	chr4:159024335-159024336	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs570066168	chr4:159024391-159024392	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs535913158	chr4:159024402-159024403	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs77104117	chr4:159024449-159024450	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs569475903	chr4:159024486-159024487	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs182690164	chr4:159024538-159024539	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs72691606	chr4:159024543-159024544	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
18	rs558027887	chr4:159024555-159024556	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs146817586	chr4:159024605-159024606	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs139486824	chr4:159024678-159024679	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs116759617	chr4:159024730-159024731	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs187983082	chr4:159024733-159024734	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs191660122	chr4:159024798-159024799	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs561658294	chr4:159024840-159024841	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs371380895	chr4:159024868-159024869	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs572202839	chr4:159024869-159024870	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs183514875	chr4:159024909-159024910	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs142813343	chr4:159024931-159024932	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs566834283	chr4:159024962-159024963	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs375482738	chr4:159024963-159024964	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs563662996	chr4:159024968-159024969	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs529302857	chr4:159025024-159025025	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs188952101	chr4:159025033-159025034	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs566091762	chr4:159025057-159025058	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs192612896	chr4:159025125-159025126	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs551520854	chr4:159025126-159025127	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs151110392	chr4:159025141-159025142	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs537321677	chr4:159025145-159025146	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs201288607	chr4:159025180-159025181	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs532534158	chr4:159025218-159025219	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs375171665	chr4:159025251-159025252	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs557248348	chr4:159025282-159025283	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs575976728	chr4:159025289-159025290	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs112645610	chr4:159025300-159025301	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs56708923	chr4:159025301-159025302	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs535152160	chr4:159025305-159025306	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs377667138	chr4:159025306-159025307	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs572003344	chr4:159025328-159025329	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs541128894	chr4:159025334-159025335	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs534203325	chr4:159025377-159025378	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:75)

Disease	PMID	Source
Acute lymphoblastic leukemia	22237106	CNVD
Glioblastoma multiforme	21080181	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Chordoma	21602918	CNVD
HIV/AIDS	22032296	CNVD
Medulloblastoma	21979893	CNVD
Neuroblastoma	18923191	CNVD
Breast cancer	21858162	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Gastric cancer	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Colorectal cancer	19359472	CNVD
Malignant mesothelioma	18160781	CNVD
Medulloblastoma	18056178	CNVD
Multiple myeloma	17077331	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Oral squamous cell carcinoma	17134496	CNVD
4q-syndrome	17576883	CNVD
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Muscular dystrophy	21149563	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Cervical cancer	21062161	CNVD
Metanephric adenoma	20802469	CNVD
Breast cancer	16608533	CNVD
Lung cancer	19208797	CNVD
Wilms tumour	21544195	CNVD
Lung cancer	18438408	CNVD
Cancer	22429812	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
primary effusion lymphomas	17116491	CNVD
Breast cancer	16272173	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Breast cancer	17133270	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Congenital anomalies of the kidney and urinary tract	20505237	CNVD
Breast cancer	17393978	CNVD
Esophageal cancer	21851588	CNVD
Testicular germ cell tumor	18059402	CNVD
Ovarian cancer	22174824	CNVD
Olfactory neuroblastoma	18408657	CNVD
Breast cancer	21785460	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Hodgkin''s lymphoma	17606441	CNVD
small cell lung cancer	20016488	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Ewing''s sarcoma	17952124	CNVD
Breast cancer	21633010	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Cancer	20581869	CNVD
Myelofibrosis	22110671	CNVD
Chronic lymphocytic leukemia	18922857	CNVD
Glioblastoma multiforme	22286061	CNVD
Breast cancer	20409316	CNVD
Basal cell lymphoma	17053054	CNVD
Hepatocellular carcinoma	16750200	CNVD
Cancer	20164919	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Breast cancer	21364760	CNVD
Autism	20841430	CNVD

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:159018600-159030000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr4:159024000-159024600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr4:159024000-159024600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr4:159029800-159030000	Enhancers	iPS-15b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links