Variant report

Variant	esv3418753
Chromosome Location	chr6:36163624-36166272
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:747)
CpG islands
(count:550)
Chromatin interactive
region (count:19)
LncRNA
region (count:5)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:747 , 50 per page) page: 1 2 3 4 5 6 7 ... 15

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr6:36164105-36164309	HepG2	liver:	n/a	n/a
2	ATF1	chr6:36164985-36165311	K562	blood:	n/a	n/a
3	ATF2	chr6:36164947-36165401	H1-hESC	embryonic stem cell:	n/a	n/a
4	BACH1	chr6:36164093-36164353	H1-hESC	embryonic stem cell:	n/a	n/a
5	BCL3	chr6:36164638-36165025	GM12878	blood:	n/a	n/a
6	BCLAF1	chr6:36163899-36164515	GM12878	blood:	n/a	chr6:36164234-36164243 chr6:36164197-36164210
7	BHLHE40	chr6:36163798-36164592	HepG2	liver:	n/a	chr6:36164526-36164542 chr6:36164517-36164533
8	BHLHE40	chr6:36165110-36165303	K562	blood:	n/a	n/a
9	BHLHE40	chr6:36163962-36164447	K562	blood:	n/a	n/a
10	BHLHE40	chr6:36164020-36164481	GM12878	blood:	n/a	n/a
11	BHLHE40	chr6:36164860-36165317	HepG2	liver:	n/a	n/a
12	BHLHE40	chr6:36164860-36165309	GM12878	blood:	n/a	n/a
13	BRCA1	chr6:36165038-36165249	HepG2	liver:	n/a	n/a
14	BRCA1	chr6:36163915-36164463	H1-hESC	embryonic stem cell:	n/a	n/a
15	BRCA1	chr6:36164116-36164643	HepG2	liver:	n/a	n/a
16	BRCA1	chr6:36164999-36165325	Hela-S3	cervix:	n/a	n/a
17	CBX3	chr6:36164788-36165386	K562	blood:	n/a	n/a
18	CBX3	chr6:36163726-36164276	K562	blood:	n/a	n/a
19	CBX3	chr6:36165425-36165866	K562	blood:	n/a	n/a
20	CCNT2	chr6:36163950-36165235	K562	blood:	n/a	chr6:36165007-36165016 chr6:36165206-36165215
21	CEBPB	chr6:36165734-36165779	H1-hESC	embryonic stem cell:	n/a	n/a
22	CEBPD	chr6:36164187-36164807	HepG2	liver:	n/a	n/a
23	CEBPD	chr6:36163930-36165300	K562	blood:	n/a	n/a
24	CEBPD	chr6:36163684-36165216	HepG2	liver:	n/a	n/a
25	CHD1	chr6:36164585-36164762	GM12878	blood:	n/a	n/a
26	CHD1	chr6:36163975-36164306	GM12878	blood:	n/a	n/a
27	CHD1	chr6:36164276-36164397	H1-hESC	embryonic stem cell:	n/a	n/a
28	CHD1	chr6:36165036-36165279	GM12878	blood:	n/a	n/a
29	CHD2	chr6:36163840-36164499	H1-hESC	embryonic stem cell:	n/a	n/a
30	CHD2	chr6:36163786-36164536	HepG2	liver:	n/a	n/a
31	CHD2	chr6:36164086-36165314	K562	blood:	n/a	n/a
32	CHD2	chr6:36165565-36165659	GM12878	blood:	n/a	n/a
33	CHD2	chr6:36164880-36165299	H1-hESC	embryonic stem cell:	n/a	n/a
34	CHD2	chr6:36164030-36165338	Hela-S3	cervix:	n/a	n/a
35	CHD2	chr6:36164870-36165285	GM12878	blood:	n/a	n/a
36	CHD2	chr6:36164848-36165223	HepG2	liver:	n/a	n/a
37	CHD2	chr6:36163750-36164382	GM12878	blood:	n/a	n/a
38	CREB1	chr6:36165000-36165314	A549	lung:	n/a	n/a
39	CREB1	chr6:36164812-36165428	H1-hESC	embryonic stem cell:	n/a	n/a
40	CREB1	chr6:36164813-36165335	A549	lung:	n/a	n/a
41	CREB1	chr6:36164985-36165440	ECC-1	luminal epithelium:	n/a	n/a
42	CREB1	chr6:36164785-36165346	GM12878	blood:	n/a	n/a
43	CREB1	chr6:36164888-36165351	ECC-1	luminal epithelium:	n/a	n/a
44	CREB1	chr6:36164822-36165401	H1-hESC	embryonic stem cell:	n/a	n/a
45	CREB1	chr6:36164011-36164461	A549	lung:	n/a	chr6:36164052-36164065
46	CREB1	chr6:36163586-36165456	HepG2	liver:	n/a	chr6:36164052-36164065
47	CTCF	chr6:36164180-36164330	HMEC	breast:	n/a	chr6:36164246-36164264
48	CTCF	chr6:36164120-36164270	GM12865	blood:	n/a	chr6:36164246-36164264
49	CTCF	chr6:36164055-36164435	K562	blood:	n/a	chr6:36164246-36164264
50	CTCF	chr6:36164079-36164368	A549	lung:	n/a	chr6:36164246-36164264

(count:550 , 50 per page) page: 1 2 3 4 5 6 7 ... 11

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:36164058-36164108	GM06990	blood:	n/a
2	chr6:36164058-36164108	GM06990	blood:	n/a
3	chr6:36165121-36165171	AoSMC	blood vessel:	n/a
4	chr6:36165382-36165432	HEK293	kidney:	embryo
5	chr6:36165204-36165254	GM12878	blood:	n/a
6	chr6:36165635-36165685	HEK293	kidney:	embryo
7	chr6:36164803-36164853	LNCaP	prostate:	n/a
8	chr6:36165635-36165685	NH-A	brain:	n/a
9	chr6:36164803-36164853	GM12892	blood:	n/a
10	chr6:36164058-36164108	HPAEpiC	pulmonary alveolar:	n/a
11	chr6:36164655-36164705	HCPEpiC	choroid plexus:	n/a
12	chr6:36164058-36164108	AoSMC	blood vessel:	n/a
13	chr6:36165382-36165432	HRCEpiC	kidney:	n/a
14	chr6:36165121-36165171	HIPEpiC	eye:	n/a
15	chr6:36165204-36165254	AG09319	gingival:	n/a
16	chr6:36165635-36165685	HRCEpiC	kidney:	n/a
17	chr6:36165635-36165685	ovcar-3	ovarian:	n/a
18	chr6:36165617-36165667	HCPEpiC	choroid plexus:	n/a
19	chr6:36165121-36165171	AG10803	skin:	n/a
20	chr6:36164058-36164108	PANC-1	pancreas:	n/a
21	chr6:36164024-36164074	HCT-116	colon:	n/a
22	chr6:36165617-36165667	AG04450	lung:	fetal
23	chr6:36164024-36164074	HCF	heart:	n/a
24	chr6:36165121-36165171	NB4	blood:	n/a
25	chr6:36164803-36164853	K562	blood:	n/a
26	chr6:36165617-36165667	BE2_C	brain:	n/a
27	chr6:36165204-36165254	HCT-116	colon:	n/a
28	chr6:36165382-36165432	SK-N-MC	brain:	n/a
29	chr6:36164655-36164705	Jurkat	blood:	n/a
30	chr6:36165204-36165254	HPAEpiC	pulmonary alveolar:	n/a
31	chr6:36164655-36164705	AG09309	skin:	n/a
32	chr6:36165617-36165667	GM06990	blood:	n/a
33	chr6:36165635-36165685	H1-hESC	embryonic stem cell:	embryo
34	chr6:36165204-36165254	NHBE	bronchial:	n/a
35	chr6:36165121-36165171	HEK293	kidney:	embryo
36	chr6:36165617-36165667	AG09309	skin:	n/a
37	chr6:36164058-36164108	HEK293	kidney:	embryo
38	chr6:36164655-36164705	AG10803	skin:	n/a
39	chr6:36164058-36164108	H1-hESC	embryonic stem cell:	embryo
40	chr6:36165382-36165432	K562	blood:	n/a
41	chr6:36165204-36165254	LNCaP	prostate:	n/a
42	chr6:36165121-36165171	AG04449	skin:	fetal
43	chr6:36165382-36165432	SKMC	muscle:	n/a
44	chr6:36164803-36164853	HPAEpiC	pulmonary alveolar:	n/a
45	chr6:36165617-36165667	SK-N-MC	brain:	n/a
46	chr6:36164655-36164705	HMEC	breast:	n/a
47	chr6:36165121-36165171	PANC-1	pancreas:	n/a
48	chr6:36164058-36164108	HCT-116	colon:	n/a
49	chr6:36164058-36164108	Hela-S3	cervix:	n/a
50	chr6:36164058-36164108	PrEC	prostate:	n/a

(count:19 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:35993265..35998448-chr6:36161633..36166981,11	K562	blood:
2	chr6:36164534..36167237-chr6:36236407..36238243,2	MCF-7	breast:
3	chr15:75660425..75661076-chr6:36164710..36165398,2	HCT-116	colon:
4	chr6:36083240..36096353-chr6:36161490..36168411,30	MCF-7	breast:
5	chr6:36152501..36154693-chr6:36162205..36164087,2	MCF-7	breast:
6	chr6:36097129..36099054-chr6:36162391..36164603,2	K562	blood:
7	chr6:35992707..35998254-chr6:36162958..36166458,7	K562	blood:
8	chr6:35993989..35997402-chr6:36163188..36166883,8	MCF-7	breast:
9	chr11:82996519..82997293-chr6:36164993..36165533,2	Hela-S3	cervix:
10	chr6:36098131..36102554-chr6:36163258..36166179,4	K562	blood:
11	chr6:35994949..35995828-chr6:36163769..36164278,2	K562	blood:
12	chr6:36089979..36090632-chr6:36163721..36164348,2	MCF-7	breast:
13	chr16:68271616..68273577-chr6:36163527..36165172,2	MCF-7	breast:
14	chr6:36133204..36136174-chr6:36161325..36163724,2	K562	blood:
15	chr6:36096617..36099142-chr6:36162886..36164936,2	MCF-7	breast:
16	chr6:36097672..36103046-chr6:36163327..36166048,5	MCF-7	breast:
17	chr6:36093292..36096677-chr6:36162699..36165787,6	K562	blood:
18	chr6:36164615..36166150-chr6:36409127..36410666,2	K562	blood:
19	chr6:36105269..36110195-chr6:36162724..36166768,9	MCF-7	breast:

(count:5 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C6orf222-1	chr6:36164852-36164982	ENSG00000246982
2	lnc-C6orf222-1	chr6:36164852-36164980	ENSG00000246982
3	lnc-C6orf222-1	chr6:36163814-36163947	ENSG00000246982
4	lnc-C6orf222-1	chr6:36163814-36163947	ENSG00000246982
5	lnc-C6orf222-1	chr6:36163814-36164288	NONHSAT112212

No data

Variant related genes	Relation type
ENSG00000246982	TF binding region
BRPF3	TF binding region
ENSG00000246982	CpG island
BRPF3	CpG island
ENSG00000221743	chromatin interactions
ENSG00000156711	chromatin interactions
ENSG00000137500	chromatin interactions
ENSG00000103067	chromatin interactions
ENSG00000180316	chromatin interactions
ENSG00000255234	chromatin interactions
ENSG00000260274	chromatin interactions
ENSG00000112078	chromatin interactions
ENSG00000140400	chromatin interactions
ENSG00000112062	chromatin interactions
TSPAN33	miRNA target sites
ERLIN1	miRNA target sites

Extended variants
information (count: 90 )
Associated
traits (count: 105 )

Variant overlapped rSNPs/rCNVs (count:90 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs554777914	chr6:36163636-36163637	Active TSS Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
2	rs576341213	chr6:36163674-36163675	Active TSS Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
3	rs182403939	chr6:36163707-36163708	Active TSS Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
4	rs573313231	chr6:36163727-36163728	Active TSS Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
5	rs111587260	chr6:36163764-36163765	Active TSS Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
6	rs142875258	chr6:36163782-36163783	Active TSS Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
7	rs28713246	chr6:36163853-36163854	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	Overlapped CNVs	n/a
8	rs558951924	chr6:36163856-36163857	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	Overlapped CNVs	n/a
9	rs576724423	chr6:36163908-36163909	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	Overlapped CNVs	n/a
10	rs376529131	chr6:36163914-36163915	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	Overlapped CNVs	n/a
11	rs185398800	chr6:36163930-36163931	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	Overlapped CNVs	n/a
12	rs9470228	chr6:36163941-36163942	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
13	rs76696370	chr6:36163943-36163944	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	Overlapped CNVs	n/a
14	rs541496489	chr6:36163945-36163946	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	Overlapped CNVs	n/a
15	rs113046152	chr6:36163994-36163995	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	Overlapped CNVs	n/a
16	rs368239533	chr6:36164031-36164032	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	Overlapped CNVs	n/a
17	rs115707874	chr6:36164055-36164056	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	Overlapped CNVs	n/a
18	rs59752650	chr6:36164068-36164069	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
19	rs149313448	chr6:36164071-36164072	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	Overlapped CNVs	n/a
20	rs9470229	chr6:36164092-36164093	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
21	rs144890112	chr6:36164113-36164114	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	Overlapped CNVs	n/a
22	rs373371454	chr6:36164118-36164119	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	Overlapped CNVs	n/a
23	rs539534043	chr6:36164123-36164124	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	Overlapped CNVs	n/a
24	rs117054385	chr6:36164155-36164156	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	Overlapped CNVs	n/a
25	rs566240162	chr6:36164159-36164160	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	Overlapped CNVs	n/a
26	rs536856201	chr6:36164256-36164257	Active TSS Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region lncRNA	5 gene(s)	Overlapped CNVs	n/a
27	rs555010622	chr6:36164282-36164283	Active TSS Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region lncRNA	5 gene(s)	Overlapped CNVs	n/a
28	rs570046289	chr6:36164349-36164350	Active TSS Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
29	rs537600306	chr6:36164402-36164403	Weak transcription Active TSS	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
30	rs558660360	chr6:36164493-36164494	Weak transcription Active TSS	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
31	rs576861710	chr6:36164620-36164621	Weak transcription Active TSS	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
32	rs540893408	chr6:36164686-36164687	Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
33	rs552871656	chr6:36164707-36164708	Weak transcription Active TSS	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
34	rs574246712	chr6:36164873-36164874	Weak transcription Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	9 gene(s)	Overlapped CNVs	n/a
35	rs541667273	chr6:36164891-36164892	Weak transcription Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	9 gene(s)	Overlapped CNVs	n/a
36	rs36093387	chr6:36164907-36164908	Weak transcription Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	9 gene(s)	Overlapped CNVs	n/a
37	rs563538730	chr6:36164927-36164928	Weak transcription Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	9 gene(s)	Overlapped CNVs	n/a
38	rs188342388	chr6:36164928-36164929	Weak transcription Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	9 gene(s)	Overlapped CNVs	n/a
39	rs545910339	chr6:36164938-36164939	Weak transcription Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	9 gene(s)	Overlapped CNVs	n/a
40	rs563427098	chr6:36164943-36164944	Weak transcription Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	9 gene(s)	Overlapped CNVs	n/a
41	rs113889420	chr6:36164974-36164975	Weak transcription Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	9 gene(s)	Overlapped CNVs	n/a
42	rs576167843	chr6:36164975-36164976	Weak transcription Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	9 gene(s)	Overlapped CNVs	n/a
43	rs528105824	chr6:36164985-36164986	Weak transcription Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
44	rs548078809	chr6:36165027-36165028	Weak transcription Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region	12 gene(s)	Overlapped CNVs	n/a
45	rs560101330	chr6:36165034-36165035	Weak transcription Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region	12 gene(s)	Overlapped CNVs	n/a
46	rs530460571	chr6:36165045-36165046	Weak transcription Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region	12 gene(s)	Overlapped CNVs	n/a
47	rs548496566	chr6:36165066-36165067	Weak transcription Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region	12 gene(s)	Overlapped CNVs	n/a
48	rs570260777	chr6:36165069-36165070	Weak transcription Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region	12 gene(s)	Overlapped CNVs	n/a
49	rs537135395	chr6:36165072-36165073	Weak transcription Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region	12 gene(s)	Overlapped CNVs	n/a
50	rs180767113	chr6:36165105-36165106	Weak transcription Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region	12 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:105)

Disease	PMID	Source
Follicular lymphoma	20505157	CNVD
Glioblastoma multiforme	21080181	CNVD
Ewing''s sarcoma	21437220	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Leukemia	21518781	CNVD
Cancer	21637783	CNVD
Facial dysmorphism	22105932	CNVD
Medulloblastoma	21979893	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Endometrial cancer	22040021	CNVD
Acute myeloid leukemia	16864856	CNVD
Breast cancer	21264507	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	16751803	CNVD
Bladder cancer	19088036	CNVD
Wilms tumour	21544195	CNVD
Uveal melanoma	21693616	CNVD
Biliary cancer	19435499	CNVD
Malaria	21533027	CNVD
Retinoblastoma	19183342	CNVD
Acute myeloid leukemia	20729466	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	21858162	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Melanoma	18172304	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Hepatocellular carcinoma	16750200	CNVD
Autism	22495311	CNVD
Cancer	16790693	CNVD
Cervical cancer	21062161	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Systemic lupus erythematosus	17503323	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Urothelial carcinoma	18382360	CNVD
Cancer	21183584	CNVD
Hodgkin''s lymphoma	17606441	CNVD
small cell lung cancer	20016488	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Gastric cancer	17908304	CNVD
Metanephric adenoma	20802469	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Schizophrenia	19571808	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Neuroblastoma	16790693	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Breast cancer	16397240	CNVD
Retinoblastoma	22278416	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Systemic lupus erythematosus	20877625	CNVD
Cleidocranial dysplasia	18696259	CNVD
Holoprosencephaly	21359414	CNVD
Liposarcoma	21253554	CNVD
Uveal melanoma	20484589	CNVD
Fibroblasts	20926602	CNVD
Systemic lupus erythematosus	19279649	CNVD
Retinoblastoma	16790693	CNVD
Acute myocardial infarction	18032375	CNVD
Renal cell carcinoma	19150565	CNVD
Systemic lupus erythematosus	19591781	CNVD
Attention deficit hyperactivity disorder	19287146	CNVD
Autism	19287146	CNVD
Erythema nodosum in leprosy	19287146	CNVD
Henoch-schoenlein purpura	19287146	CNVD
Liver cirrhosis	19287146	CNVD
Systemic lupus erythematosus	19287146	CNVD
Autoimmune disease	19135723	CNVD
Congenital adrenal hyperplasia	18478071	CNVD
Systemic lupus erythematosus	19287147	CNVD
Osteosarcoma	16790693	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Cancer	22183965	CNVD
Melanoma	22183965	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Lung cancer	18438408	CNVD
Glioblastoma multiforme	21138945	CNVD
Breast cancer	21364760	CNVD
Basal cell lymphoma	19029149	CNVD
Diffuse large b-cell lymphoma	19029149	CNVD
Myelofibrosis	22110671	CNVD
Liver carcinoma	19366792	CNVD
Chronic lymphocytic leukemia	22228453	CNVD
Lung cancer	19153074	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:522 , 50 per page) page: 1 2 3 4 5 6 7 ... 11

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36157600-36163800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:36163000-36163800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
3	chr6:36163000-36165800	Active TSS	H9 Cell Line	embryonic stem cell
4	chr6:36163200-36163800	Enhancers	Primary hematopoietic stem cells	blood
5	chr6:36163200-36163800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
6	chr6:36163200-36163800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr6:36163200-36163800	Enhancers	Primary T killer memory cells from peripheral blood	blood
8	chr6:36163200-36165800	Active TSS	HUES6 Cell Line	embryonic stem cell
9	chr6:36163200-36166200	Active TSS	iPS-18 Cell Line	embryonic stem cell
10	chr6:36163400-36163800	Flanking Active TSS	H1 Cell Line	embryonic stem cell
11	chr6:36163400-36163800	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr6:36163400-36163800	Enhancers	Primary B cells from peripheral blood	blood
13	chr6:36163400-36163800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
14	chr6:36163400-36163800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
15	chr6:36163400-36163800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr6:36163400-36163800	Flanking Active TSS	Liver	Liver
17	chr6:36163400-36163800	Flanking Active TSS	Brain Cingulate Gyrus	brain
18	chr6:36163400-36163800	Enhancers	Fetal Heart	heart
19	chr6:36163400-36163800	Flanking Active TSS	Fetal Intestine Small	intestine
20	chr6:36163400-36163800	Enhancers	Fetal Lung	lung
21	chr6:36163400-36163800	Active TSS	Thymus	Thymus
22	chr6:36163400-36163800	Active TSS	HepG2	liver
23	chr6:36163400-36164000	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr6:36163400-36164000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
25	chr6:36163400-36164000	Flanking Active TSS	Duodenum Mucosa	Duodenum
26	chr6:36163400-36164200	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
27	chr6:36163400-36164200	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
28	chr6:36163400-36164200	Active TSS	Fetal Brain Male	brain
29	chr6:36163400-36164200	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
30	chr6:36163400-36164200	Flanking Active TSS	Dnd41	blood
31	chr6:36163400-36164400	Active TSS	ES-I3 Cell Line	embryonic stem cell
32	chr6:36163400-36164400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
33	chr6:36163400-36165600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr6:36163400-36165600	Active TSS	Fetal Brain Female	brain
35	chr6:36163400-36165600	Active TSS	Fetal Intestine Large	intestine
36	chr6:36163400-36166000	Active TSS	Pancreatic Islets	Pancreatic Islet
37	chr6:36163400-36166200	Active TSS	HUES64 Cell Line	embryonic stem cell
38	chr6:36163400-36166400	Active TSS	iPS-15b Cell Line	embryonic stem cell
39	chr6:36163400-36166400	Active TSS	Fetal Kidney	kidney
40	chr6:36163600-36163800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr6:36163600-36163800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr6:36163600-36163800	Flanking Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr6:36163600-36163800	Enhancers	Primary monocytes fromperipheralblood	blood
44	chr6:36163600-36163800	Active TSS	Cortex derived primary cultured neurospheres	brain
45	chr6:36163600-36163800	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr6:36163600-36163800	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr6:36163600-36163800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
48	chr6:36163600-36163800	Enhancers	Colonic Mucosa	Colon
49	chr6:36163600-36163800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
50	chr6:36163600-36163800	Active TSS	Fetal Muscle Trunk	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links