Variant report

Variant esv3418808
Chromosome Location chr5:16940001-16973969
allele n/a
Outlinks Ensembl   UCSC
Chromatin state (count:151 , 50 per page) page: 1 2 3 4
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:16938200-16957600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
2 chr5:16939200-16940600 Enhancers hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
3 chr5:16939200-16940600 Enhancers HUES64 Cell Line embryonic stem cell
4 chr5:16940000-16940600 Enhancers H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
5 chr5:16940000-16940600 Enhancers Fetal Kidney kidney
6 chr5:16940000-16940800 Bivalent Enhancer Cortex derived primary cultured neurospheres brain
7 chr5:16940200-16940400 Flanking Active TSS Fetal Lung lung
8 chr5:16940200-16940600 Bivalent/Poised TSS Fetal Brain Male brain
9 chr5:16940400-16940600 Enhancers ES-I3 Cell Line embryonic stem cell
10 chr5:16940400-16940600 Enhancers H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
11 chr5:16940400-16940600 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
12 chr5:16940400-16940600 Flanking Bivalent TSS/Enh Brain Angular Gyrus brain
13 chr5:16940400-16940600 Bivalent Enhancer Fetal Intestine Small intestine
14 chr5:16940400-16940600 Bivalent Enhancer Rectal Mucosa Donor 31 rectum
15 chr5:16940400-16940600 Bivalent Enhancer A549 lung
16 chr5:16944600-16945000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
17 chr5:16944600-16945000 Enhancers hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
18 chr5:16945000-16945200 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
19 chr5:16945200-16946000 ZNF genes & repeats hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
20 chr5:16947600-16948400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
21 chr5:16949400-16950000 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
22 chr5:16949400-16950000 Enhancers Fetal Adrenal Gland Adrenal Gland
23 chr5:16949400-16950200 Enhancers Foreskin Melanocyte Primary Cells skin01 Skin
24 chr5:16949600-16950000 Enhancers A549 lung
25 chr5:16952000-16952200 Enhancers ES-UCSF4 Cell Line embryonic stem cell
26 chr5:16952200-16953200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
27 chr5:16952600-16953600 Enhancers Duodenum Mucosa Duodenum
28 chr5:16952600-16953600 Enhancers Fetal Intestine Large intestine
29 chr5:16952600-16953600 Enhancers Fetal Intestine Small intestine
30 chr5:16952800-16953600 Enhancers ES-WA7 Cell Line embryonic stem cell
31 chr5:16952800-16953600 Enhancers H1 Cell Line embryonic stem cell
32 chr5:16952800-16953600 Enhancers Rectal Mucosa Donor 31 rectum
33 chr5:16953000-16953800 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
34 chr5:16953200-16953600 Enhancers ES-I3 Cell Line embryonic stem cell
35 chr5:16953200-16953600 Enhancers H9 Cell Line embryonic stem cell
36 chr5:16953200-16953600 Enhancers HUES64 Cell Line embryonic stem cell
37 chr5:16953200-16953600 Enhancers iPS-15b Cell Line embryonic stem cell
38 chr5:16953200-16953600 Enhancers iPS DF 6.9 Cell Line embryonic stem cell
39 chr5:16953200-16953600 Enhancers ES-UCSF4 Cell Line embryonic stem cell
40 chr5:16953200-16953600 Enhancers HepG2 liver
41 chr5:16953200-16953600 Enhancers Osteobl bone
42 chr5:16953200-16955200 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
43 chr5:16953400-16953800 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
44 chr5:16953400-16957600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
45 chr5:16953600-16957600 Weak transcription Osteobl bone
46 chr5:16953600-16957800 Weak transcription ES-WA7 Cell Line embryonic stem cell
47 chr5:16953800-16957600 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
48 chr5:16953800-16957600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
49 chr5:16954800-16955200 Enhancers Primary hematopoietic stem cells short term culture blood
50 chr5:16955200-16958000 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell

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