Variant report

Variant	esv3418861
Chromosome Location	chr3:52415012-52419710
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:286)
CpG islands
(count:61)
Chromatin interactive
region (count:22)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:286 , 50 per page) page: 1 2 3 4 5 6

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ATF2	chr3:52419081-52419540	H1-hESC	embryonic stem cell:	n/a	n/a
2	ATF2	chr3:52419153-52419561	H1-hESC	embryonic stem cell:	n/a	n/a
3	ATF3	chr3:52419281-52419435	K562	blood:	n/a	n/a
4	BHLHE40	chr3:52419233-52419545	K562	blood:	n/a	n/a
5	CBX3	chr3:52419214-52419450	K562	blood:	n/a	n/a
6	CCNT2	chr3:52419297-52419577	K562	blood:	n/a	n/a
7	CTCF	chr3:52419069-52419747	MCF-7	breast:	n/a	n/a
8	CTCF	chr3:52419320-52419470	GM12872	blood:	n/a	n/a
9	CTCF	chr3:52419320-52419470	Caco-2	colon:	n/a	n/a
10	CTCF	chr3:52419300-52419450	NHEK	skin:	n/a	n/a
11	CTCF	chr3:52419310-52419474	Spleen_OC	spleen:	n/a	n/a
12	CTCF	chr3:52419340-52419490	GM12873	blood:	n/a	n/a
13	CTCF	chr3:52419300-52419450	WI-38	lung:	n/a	n/a
14	CTCF	chr3:52419130-52419656	H1-hESC	embryonic stem cell:	n/a	n/a
15	CTCF	chr3:52419147-52419537	A549	lung:	n/a	n/a
16	CTCF	chr3:52419040-52419190	GM12870	blood:	n/a	n/a
17	CTCF	chr3:52419320-52419470	A549	lung:	n/a	n/a
18	CTCF	chr3:52419320-52419470	NHEK	skin:	n/a	n/a
19	CTCF	chr3:52419318-52419489	GM13976	blood:	n/a	n/a
20	CTCF	chr3:52419260-52419529	LNCaP	prostate:	n/a	n/a
21	CTCF	chr3:52419340-52419490	HCPEpiC	choroid plexus:	n/a	n/a
22	CTCF	chr3:52419270-52419553	Gliobla	brain:	n/a	n/a
23	CTCF	chr3:52419300-52419450	GM12874	blood:	n/a	n/a
24	CTCF	chr3:52419320-52419470	HCFaa	heart:	n/a	n/a
25	CTCF	chr3:52419320-52419470	HEK293	kidney:	n/a	n/a
26	CTCF	chr3:52419200-52419552	HepG2	liver:	n/a	n/a
27	CTCF	chr3:52418940-52419090	WERI-Rb-1	eye:	n/a	n/a
28	CTCF	chr3:52419320-52419470	HAc	cerebellar:	n/a	n/a
29	CTCF	chr3:52419360-52419510	AG09309	skin:	n/a	n/a
30	CTCF	chr3:52419320-52419470	AG04449	skin:	n/a	n/a
31	CTCF	chr3:52419700-52419850	GM12873	blood:	n/a	n/a
32	CTCF	chr3:52419300-52419450	GM12867	blood:	n/a	n/a
33	CTCF	chr3:52419340-52419490	AG04450	lung:	n/a	n/a
34	CTCF	chr3:52419360-52419510	NHDF-neo	bronchial:	n/a	n/a
35	CTCF	chr3:52419340-52419490	GM12864	blood:	n/a	n/a
36	CTCF	chr3:52419360-52419510	NB4	blood:	n/a	n/a
37	CTCF	chr3:52419260-52419410	RPTEC	kidney:	n/a	n/a
38	CTCF	chr3:52419340-52419490	WERI-Rb-1	eye:	n/a	n/a
39	CTCF	chr3:52419340-52419490	HUVEC	blood vessel:	n/a	n/a
40	CTCF	chr3:52419016-52419770	K562	blood:	n/a	n/a
41	CTCF	chr3:52419249-52419550	Fibrobl	skin:	n/a	n/a
42	CTCF	chr3:52419294-52419507	Medullo	brain:	n/a	n/a
43	CTCF	chr3:52419320-52419470	HMEC	breast:	n/a	n/a
44	CTCF	chr3:52419300-52419450	GM12871	blood:	n/a	n/a
45	CTCF	chr3:52419320-52419470	HVMF	connective:	n/a	n/a
46	CTCF	chr3:52419340-52419490	HBMEC	blood vessel:	n/a	n/a
47	CTCF	chr3:52419060-52419210	GM12865	blood:	n/a	n/a
48	CTCF	chr3:52419312-52419501	GM10248	blood:	n/a	n/a
49	CTCF	chr3:52419293-52419507	GM13977	blood:	n/a	n/a
50	CTCF	chr3:52419300-52419450	HEK293	kidney:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr3:52419359-52419409	MCF10A-Er-Src	breast:	n/a
2	chr3:52419359-52419409	MCF-7	breast:	n/a
3	chr3:52419359-52419409	GM12892	blood:	n/a
4	chr3:52419359-52419409	NHBE	bronchial:	n/a
5	chr3:52419359-52419409	K562	blood:	n/a
6	chr3:52419359-52419409	HepG2	liver:	n/a
7	chr3:52419359-52419409	U87	brain:	n/a
8	chr3:52419359-52419409	Jurkat	blood:	n/a
9	chr3:52419359-52419409	NH-A	brain:	n/a
10	chr3:52419359-52419409	PFSK-1	brain:	n/a
11	chr3:52419359-52419409	ovcar-3	ovarian:	n/a
12	chr3:52419359-52419409	SAEC	small airway:	n/a
13	chr3:52419359-52419409	GM19239	blood:	n/a
14	chr3:52419359-52419409	BE2_C	brain:	n/a
15	chr3:52419359-52419409	T-47D	breast:	n/a
16	chr3:52419359-52419409	H1-hESC	embryonic stem cell:	embryo
17	chr3:52419359-52419409	HPAEpiC	pulmonary alveolar:	n/a
18	chr3:52419359-52419409	PANC-1	pancreas:	n/a
19	chr3:52419359-52419409	SK-N-SH_RA	brain:	n/a
20	chr3:52419359-52419409	AoSMC	blood vessel:	n/a
21	chr3:52419359-52419409	CMK	blood:	n/a
22	chr3:52419359-52419409	HEEpiC	esophagus:	n/a
23	chr3:52419359-52419409	HRPEpiC	eye:	n/a
24	chr3:52419359-52419409	AG10803	skin:	n/a
25	chr3:52419359-52419409	HNPCEpiC	eye:	n/a
26	chr3:52419359-52419409	AG04450	lung:	fetal
27	chr3:52419359-52419409	NB4	blood:	n/a
28	chr3:52419359-52419409	AG04449	skin:	fetal
29	chr3:52419359-52419409	AG09319	gingival:	n/a
30	chr3:52419359-52419409	AG09309	skin:	n/a
31	chr3:52419359-52419409	GM06990	blood:	n/a
32	chr3:52419359-52419409	Hepatocyte	liver:	n/a
33	chr3:52419359-52419409	HL-60	blood:	n/a
34	chr3:52419359-52419409	Hela-S3	cervix:	n/a
35	chr3:52419359-52419409	GM12878	blood:	n/a
36	chr3:52419359-52419409	HRCEpiC	kidney:	n/a
37	chr3:52419359-52419409	HCF	heart:	n/a
38	chr3:52419359-52419409	Caco-2	colon:	n/a
39	chr3:52419359-52419409	BJ	skin:	n/a
40	chr3:52419359-52419409	HCM	heart:	n/a
41	chr3:52419359-52419409	NT2-D1	testis:	n/a
42	chr3:52419359-52419409	HMEC	breast:	n/a
43	chr3:52419359-52419409	SKMC	muscle:	n/a
44	chr3:52419359-52419409	PrEC	prostate:	n/a
45	chr3:52419359-52419409	HCT-116	colon:	n/a
46	chr3:52419359-52419409	GM12891	blood:	n/a
47	chr3:52419359-52419409	HIPEpiC	eye:	n/a
48	chr3:52419359-52419409	HEK293	kidney:	embryo
49	chr3:52419359-52419409	A549	lung:	n/a
50	chr3:52419359-52419409	SK-N-SH	brain:	n/a

(count:22 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:52419090..52421222-chr3:52428572..52431039,2	MCF-7	breast:
2	chr3:52325390..52326371-chr3:52418909..52419771,3	MCF-7	breast:
3	chr3:52265291..52266190-chr3:52418948..52419840,4	K562	blood:
4	chr3:52321701..52324169-chr3:52414914..52417195,2	MCF-7	breast:
5	chr3:52406883..52409184-chr3:52415694..52419355,3	K562	blood:
6	chr3:52408372..52408995-chr3:52419399..52420367,2	MCF-7	breast:
7	chr3:52035497..52036188-chr3:52418905..52419682,3	MCF-7	breast:
8	chr3:52413424..52415334-chr3:52416038..52418225,2	K562	blood:
9	chr3:52413340..52415440-chr3:52417250..52419187,2	MCF-7	breast:
10	chr3:52254511..52255400-chr3:52419342..52419886,2	K562	blood:
11	chr3:52325192..52326082-chr3:52419115..52419793,5	MCF-7	breast:
12	chr3:52250996..52253546-chr3:52419538..52422445,2	K562	blood:
13	chr3:52312722..52314589-chr3:52419579..52422419,2	MCF-7	breast:
14	chr3:52413424..52415334-chr3:52416038..52418225,2	K562	blood:
15	chr3:52417646..52419633-chr3:52427141..52429789,2	K562	blood:
16	chr3:52325194..52326110-chr3:52418963..52419968,4	K562	blood:
17	chr3:52409617..52410373-chr3:52418918..52419802,2	MCF-7	breast:
18	chr3:52410804..52413361-chr3:52413563..52417960,4	K562	blood:
19	chr3:52280316..52283002-chr3:52418190..52421140,2	K562	blood:
20	chr3:52390322..52390942-chr3:52419226..52419756,2	MCF-7	breast:
21	chr3:52406156..52409184-chr3:52415561..52421026,5	K562	blood:
22	chr3:52265330..52266149-chr3:52419100..52419914,3	MCF-7	breast:

No data

Variant related genes	Relation type
DNAH1	TF binding region
DNAH1	CpG island
ENSG00000168237	chromatin interactions
ENSG00000114841	chromatin interactions
ENSG00000164088	chromatin interactions
ENSG00000239557	chromatin interactions
ENSG00000164091	chromatin interactions

Extended variants
information (count: 224 )
Associated
traits (count: 97 )

Variant overlapped rSNPs/rCNVs (count:224 , 50 per page) page: 1 2 3 4 5

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs571244160	chr3:52415045-52415046	Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
2	rs143775071	chr3:52415056-52415057	Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
3	rs539398570	chr3:52415090-52415091	Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
4	rs553817385	chr3:52415109-52415110	Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
5	rs573822789	chr3:52415124-52415125	Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
6	rs542839215	chr3:52415135-52415136	Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
7	rs181301681	chr3:52415152-52415153	Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
8	rs551654777	chr3:52415172-52415173	Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
9	rs545301189	chr3:52415205-52415206	Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
10	rs565106504	chr3:52415223-52415224	Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
11	rs569923619	chr3:52415259-52415260	Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
12	rs537256695	chr3:52415263-52415264	Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
13	rs184329189	chr3:52415322-52415323	Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
14	rs527663572	chr3:52415404-52415405	Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
15	rs145765456	chr3:52415409-52415410	Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
16	rs561422573	chr3:52415430-52415431	Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
17	rs530137670	chr3:52415453-52415454	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
18	rs535569805	chr3:52415497-52415498	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
19	rs549923167	chr3:52415498-52415499	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
20	rs569932352	chr3:52415504-52415505	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
21	rs532639633	chr3:52415561-52415562	Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
22	rs552816646	chr3:52415567-52415568	Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
23	rs375844045	chr3:52415607-52415608	Weak transcription Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
24	rs566281756	chr3:52415615-52415616	Weak transcription Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
25	rs533775269	chr3:52415626-52415627	Weak transcription Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
26	rs553536901	chr3:52415627-52415628	Weak transcription Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
27	rs368280217	chr3:52415633-52415634	Weak transcription Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
28	rs202184724	chr3:52415639-52415640	Weak transcription Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
29	rs376075028	chr3:52415652-52415653	Weak transcription Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
30	rs372646577	chr3:52415665-52415666	Weak transcription Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
31	rs201633223	chr3:52415680-52415681	Weak transcription Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
32	rs199694029	chr3:52415693-52415694	Weak transcription Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
33	rs371803497	chr3:52415700-52415701	Weak transcription Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
34	rs374787052	chr3:52415702-52415703	Weak transcription Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
35	rs369957070	chr3:52415707-52415708	Weak transcription Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
36	rs373427372	chr3:52415736-52415737	Weak transcription Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
37	rs61734632	chr3:52415737-52415738	Weak transcription Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
38	rs576324030	chr3:52415765-52415766	Weak transcription Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
39	rs200839854	chr3:52415789-52415790	Weak transcription Enhancers	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
40	rs369479974	chr3:52415817-52415818	Weak transcription	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
41	rs373044616	chr3:52415841-52415842	Weak transcription	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
42	rs377213436	chr3:52415842-52415843	Weak transcription	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
43	rs370368596	chr3:52415858-52415859	Weak transcription	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
44	rs770284	chr3:52415865-52415866	Weak transcription	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
45	rs541411281	chr3:52415893-52415894	Weak transcription	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
46	rs377383962	chr3:52415901-52415902	Weak transcription	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
47	rs575956044	chr3:52415912-52415913	Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
48	rs560957695	chr3:52415944-52415945	Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
49	rs112378680	chr3:52415966-52415967	Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
50	rs376362315	chr3:52416156-52416157	Enhancers Weak transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:97)

Disease	PMID	Source
Acute myeloid leukemia	20729466	CNVD
Urothelial carcinoma	18382360	CNVD
Melanoma	18172304	CNVD
Cervical cancer	21062161	CNVD
Hirschsprung''s Disease	21712996	CNVD
Glioblastoma multiforme	21080181	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Insulin resistance	16721378	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Ewing''s sarcoma	21437220	CNVD
Neuroblastoma	21484798	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Oral cancer	19627613	CNVD
Renal cell carcinoma	19461508	CNVD
Epithelial cancer	22065749	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Acute myeloid leukemia	16864856	CNVD
Liposarcoma	21253554	CNVD
Basal cell lymphoma	21115979	CNVD
Endometrial cancer	22040021	CNVD
Pancreatic endocrine tumor	20981439	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	17387387	CNVD
Oral cancer	21386901	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Medulloblastoma	21979893	CNVD
Basal cell lymphoma	17053054	CNVD
Esophageal cancer	21851588	CNVD
Uveal melanoma	21693616	CNVD
Retinoblastoma	21504564	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Renal cell carcinoma	21668985	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Thoracic aortic aneurysm	21092924	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	17603634	CNVD
Esophageal cancer	20955586	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Myofibroblastic sarcoma	19369631	CNVD
Breast cancer	17133270	CNVD
Uveal melanoma	20484589	CNVD
Autism	22495311	CNVD
Melanoma	20688739	CNVD
Acute myeloid leukemia	21251322	CNVD
Hepatocellular carcinoma	16750200	CNVD
Cancer	21183584	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Bipolar disorder	20877625	CNVD
Bipolar disorder	21956041	CNVD
Bipolar disorder	22241247	CNVD
Biliary cancer	18923514	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Malignant mesothelioma	18160781	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	16397240	CNVD
Breast cancer	22032731	CNVD
Non-small cell lung cancer	20864512	CNVD
Colorectal cancer	16912164	CNVD
Non-small cell lung cancer	19010865	CNVD
Colorectal cancer	16272173	CNVD
Non-muscle invasive bladder neoplasm	19445696	CNVD
Breast cancer	21785460	CNVD
Neuroblastoma	17327916	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Bladder cancer	21909424	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Septo-optic dysplasia	21572526	CNVD
Biliary cancer	19435499	CNVD
Squamous cell cancer	20885788	CNVD
Myelofibrosis	22110671	CNVD
Urothelial cell carcinoma	18451213	CNVD
Ventriculomegaly	21325761	CNVD
Breast cancer	16608533	CNVD
Prostate cancer	21965145	CNVD
Cancer	21129771	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Lung cancer	16618734	CNVD
Neuroblastoma	19686582	CNVD
Renal cell carcinoma	18765545	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:131 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:52374200-52427000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr3:52385400-52434600	Weak transcription	Small Intestine	intestine
3	chr3:52393200-52434800	Weak transcription	Colon Smooth Muscle	Colon
4	chr3:52395000-52443200	Weak transcription	Right Atrium	heart
5	chr3:52395400-52433200	Weak transcription	HSMMtube	muscle
6	chr3:52397800-52433000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr3:52398000-52425200	Weak transcription	Left Ventricle	heart
8	chr3:52403400-52433800	Weak transcription	Brain Germinal Matrix	brain
9	chr3:52405200-52425000	Weak transcription	Aorta	Aorta
10	chr3:52405400-52425200	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr3:52406400-52425400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr3:52407200-52422200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr3:52407600-52420800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr3:52407800-52421600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr3:52408000-52419200	Weak transcription	Fetal Thymus	thymus
16	chr3:52408000-52421800	Weak transcription	Primary T helper cells PMA-I stimulated	--
17	chr3:52408000-52433200	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr3:52408000-52436600	Weak transcription	Fetal Kidney	kidney
19	chr3:52408600-52421000	Weak transcription	Primary B cells from peripheral blood	blood
20	chr3:52409600-52416000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr3:52409800-52418800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr3:52409800-52425200	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr3:52410000-52425200	Weak transcription	Primary B cells from cord blood	blood
24	chr3:52410000-52433200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr3:52410000-52434400	Weak transcription	Rectal Smooth Muscle	rectum
26	chr3:52410200-52416400	Weak transcription	Esophagus	oesophagus
27	chr3:52410200-52418800	Weak transcription	Brain Cingulate Gyrus	brain
28	chr3:52410200-52420400	Weak transcription	Colonic Mucosa	Colon
29	chr3:52410200-52425000	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr3:52410200-52426800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
31	chr3:52410400-52417400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
32	chr3:52410400-52417800	Weak transcription	Primary monocytes fromperipheralblood	blood
33	chr3:52410400-52418000	Weak transcription	Monocytes-CD14+_RO01746	blood
34	chr3:52410400-52418600	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr3:52410400-52419000	Weak transcription	Brain Hippocampus Middle	brain
36	chr3:52410400-52419200	Weak transcription	Brain Angular Gyrus	brain
37	chr3:52410400-52419400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
38	chr3:52410400-52420400	Weak transcription	Primary T cells fromperipheralblood	blood
39	chr3:52410600-52419000	Weak transcription	Adipose Nuclei	Adipose
40	chr3:52410600-52419200	Weak transcription	Primary T helper cells fromperipheralblood	blood
41	chr3:52410600-52419200	Weak transcription	Brain Inferior Temporal Lobe	brain
42	chr3:52410600-52420200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr3:52410600-52420200	Weak transcription	Fetal Intestine Large	intestine
44	chr3:52410600-52422200	Weak transcription	Skeletal Muscle Female	skeletal muscle
45	chr3:52410600-52424800	Weak transcription	Rectal Mucosa Donor 29	rectum
46	chr3:52410600-52425000	Weak transcription	Duodenum Mucosa	Duodenum
47	chr3:52410600-52435400	Weak transcription	Primary hematopoietic stem cells	blood
48	chr3:52410800-52419000	Weak transcription	Spleen	Spleen
49	chr3:52411000-52417800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr3:52411000-52418800	Weak transcription	Brain Anterior Caudate	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links