Variant report

Variant	esv3418887
Chromosome Location	chr11:45276335-45276581
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PRDM11-1	chr11:45276292-45276444	NONHSAT019014
2	lnc-PRDM11-1	chr11:45275925-45276444	NONHSAT019016

Extended variants
information (count: 16 )
Associated
traits (count: 57 )

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs534055662	chr11:45276373-45276374	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
2	rs554403972	chr11:45276385-45276386	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
3	rs146976722	chr11:45276391-45276392	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
4	rs200092745	chr11:45276392-45276393	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
5	rs546484935	chr11:45276421-45276422	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
6	rs563195618	chr11:45276422-45276423	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
7	rs2902429	chr11:45276425-45276426	Weak transcription Strong transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
8	rs576870980	chr11:45276430-45276431	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
9	rs115899698	chr11:45276457-45276458	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs183658850	chr11:45276479-45276480	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs529746983	chr11:45276497-45276498	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs374511674	chr11:45276502-45276503	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs200307014	chr11:45276508-45276509	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs546290112	chr11:45276526-45276527	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs562493970	chr11:45276557-45276558	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs138143343	chr11:45276568-45276569	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:57)

Disease	PMID	Source
Parathyroid adenoma	22454399	CNVD
Medulloblastoma	21979893	CNVD
Chordoma	21602918	CNVD
Breast cancer	21949216	CNVD
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	19222835	CNVD
T-cell acute lymphoblastic leukemia	20065082	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Beckwith-Wiedemann syndrome	21518781	CNVD
Wilms tumour	21518781	CNVD
Hepatoblastoma	21518781	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Paraganglioma	17535989	CNVD
Pulmonary chondroma	17535989	CNVD
Wilms tumour	21544195	CNVD
Gastric cancer	17908304	CNVD
Multiple myeloma	20724749	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Autism	22495311	CNVD
Lung cancer	18438408	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Non-small cell lung cancer	21385341	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	21785460	CNVD
Medulloblastoma	16783165	CNVD
Renal cell carcinoma	18194544	CNVD
Breast cancer	17603634	CNVD
Chordoma	18071362	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Breast cancer	21364760	CNVD
Potocki-Shaffer syndrome	19222835	CNVD
WAGR syndrome	19222835	CNVD
small cell lung cancer	20016488	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Myelofibrosis	22110671	CNVD
Melanoma	18172304	CNVD
Intracranial ependymoma	16609018	CNVD
Myxofibrosarcoma	16751306	CNVD
Potocki-Shaffer syndrome	22470819	CNVD
Neurodevelopmental disorder	22521361	CNVD
Breast cancer	16608533	CNVD
Hirschsprung''s Disease	21712996	CNVD
Follicular lymphoma	20505157	CNVD
Colorectal cancer	21128281	CNVD
Breast cancer	20409316	CNVD
Neurocytoma	17123091	CNVD
Central neurocytomas	17123091	CNVD
Multiple myeloma	16616336	CNVD
Cancer	17160897	CNVD
Mantle cell lymphoma	19029149	CNVD
Glioblastoma multiforme	21138945	CNVD
Prostate cancer	18632612	CNVD

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45259800-45279800	Weak transcription	Fetal Brain Male	brain
2	chr11:45264400-45280400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr11:45265400-45281200	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr11:45265600-45276400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr11:45267800-45280400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr11:45272800-45281200	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr11:45273200-45277600	Strong transcription	Fetal Intestine Large	intestine
8	chr11:45273200-45277800	Strong transcription	Fetal Brain Female	brain
9	chr11:45274000-45280600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr11:45274400-45280000	Strong transcription	Fetal Intestine Small	intestine
11	chr11:45274400-45280000	Weak transcription	A549	lung
12	chr11:45274400-45281000	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr11:45274400-45281200	Weak transcription	Pancreas	Pancrea
14	chr11:45274400-45281400	Weak transcription	Gastric	stomach
15	chr11:45274600-45277000	Weak transcription	Spleen	Spleen
16	chr11:45274600-45280600	Weak transcription	Colonic Mucosa	Colon
17	chr11:45274600-45281000	Weak transcription	HSMM	muscle
18	chr11:45275000-45276800	Strong transcription	Brain Germinal Matrix	brain
19	chr11:45275600-45277200	Strong transcription	Pancreatic Islets	Pancreatic Islet
20	chr11:45275600-45281200	Weak transcription	HSMMtube	muscle
21	chr11:45276000-45281000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr11:45276000-45281000	Weak transcription	NH-A	brain
23	chr11:45276200-45277800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr11:45276200-45281000	Weak transcription	Duodenum Mucosa	Duodenum

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