Variant report

Variant	esv3419332
Chromosome Location	chr7:61095278-61241278
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 1368 )
Associated
traits (count: 72 )

Variant overlapped rSNPs/rCNVs (count:1368 , 50 per page) page: 1 2 3 4 5 6 7 ... 28

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs114238286	chr7:61095286-61095287	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs565887914	chr7:61095287-61095288	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs114318345	chr7:61095312-61095313	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs76041923	chr7:61095314-61095315	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs185793324	chr7:61095315-61095316	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs551664003	chr7:61095316-61095317	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs190991054	chr7:61095321-61095322	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs181068252	chr7:61095323-61095324	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs201374546	chr7:61095335-61095336	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs80207871	chr7:61095336-61095337	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs74527121	chr7:61095356-61095357	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs555430943	chr7:61095358-61095359	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs528894086	chr7:61095360-61095361	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs567356979	chr7:61095363-61095364	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs80087470	chr7:61095365-61095366	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs80027496	chr7:61095368-61095369	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs60555701	chr7:61095371-61095372	ZNF genes & repeats Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
18	rs80271273	chr7:61095372-61095373	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs191163506	chr7:61095374-61095375	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs62459673	chr7:61095376-61095377	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs572606466	chr7:61095378-61095379	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs62459674	chr7:61095389-61095390	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs546119798	chr7:61095396-61095397	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs558423598	chr7:61095401-61095402	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs576353790	chr7:61095414-61095415	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs543393405	chr7:61095415-61095416	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs62459675	chr7:61095416-61095417	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs529319746	chr7:61095418-61095419	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs541517261	chr7:61095419-61095420	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs111421096	chr7:61095422-61095423	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs559242237	chr7:61095428-61095429	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs200678242	chr7:61095433-61095434	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs551333324	chr7:61095442-61095443	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs569943985	chr7:61095443-61095444	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs201985769	chr7:61095444-61095445	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs368835997	chr7:61095464-61095465	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs530863159	chr7:61095478-61095479	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs111286575	chr7:61095479-61095480	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs112142355	chr7:61095484-61095485	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs201973745	chr7:61095491-61095492	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs182901072	chr7:61095492-61095493	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs373411464	chr7:61095506-61095507	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs113068130	chr7:61095511-61095512	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs548682504	chr7:61095516-61095517	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs111885575	chr7:61095518-61095519	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs546663625	chr7:61095538-61095539	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs571299936	chr7:61095540-61095541	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs202030934	chr7:61095541-61095542	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs200161303	chr7:61095544-61095545	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs576294301	chr7:61095551-61095552	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:72)

Disease	PMID	Source
Wilms tumour	21544195	CNVD
Medulloblastoma	21979893	CNVD
Basal cell lymphoma	17170743	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Melanoma	18172304	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Stenocardia	21860640	CNVD
Vasospasm	21860640	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	22495311	CNVD
Follicular lymphoma	20505157	CNVD
Biliary cancer	19435499	CNVD
Williams-beuren syndrome	22470819	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Multiple myeloma	16461302	CNVD
Glioblastoma multiforme	21750150	CNVD
Cancer	21183584	CNVD
Hepatocellular carcinoma	16750200	CNVD
Non-small cell lung cancer	21829676	CNVD
Gastric cancer	24379144	CNVD
Glioblastoma multiforme	17002787	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Lissencephaly	21572526	CNVD
Breast cancer	17603634	CNVD
Liposarcoma	21253554	CNVD
Breast cancer	16397240	CNVD
Acute myeloid leukemia	16864856	CNVD
Hodgkin''s lymphoma	18641027	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Squamous cell cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Glioblastoma multiforme	17387387	CNVD
Low-grade fibromyxoid sarcoma	0	CNVD
Oligodendroglial tumors	17285580	CNVD
Endometrial cancer	22040021	CNVD
Burkitt''s lymphoma	18698080	CNVD
Breast cancer	21264507	CNVD
Shwachman-Diamond syndrome	22934832	CNVD
Glioblastoma	21080181	CNVD
Autism	18414403	CNVD
Colorectal cancer	16272173	CNVD
Colorectal cancer	19359472	CNVD
Cutaneous malignant melanoma	17690212	CNVD
Leukemia	17361228	CNVD
Breast cancer	16461572	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Malignant melanoma	17690212	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Breast cancer	21364760	CNVD
Cancer	20164919	CNVD
Recurrent pregnancy loss	19789632	CNVD
Breast cancer	21990379	CNVD
Myelofibrosis	22110671	CNVD
Schizophrenia	21399695	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Astrocytoma	22246337	CNVD
Renal cell carcinoma	18592004	CNVD

Chromatin state (count:162 , 50 per page) page: 1 2 3 4

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:61087600-61098000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
2	chr7:61087800-61098000	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
3	chr7:61091400-61098000	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
4	chr7:61092200-61099600	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr7:61093800-61097200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr7:61095400-61095600	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
7	chr7:61095400-61095600	ZNF genes & repeats	Primary T killer memory cells from peripheral blood	blood
8	chr7:61095400-61095600	ZNF genes & repeats	Fetal Lung	lung
9	chr7:61095400-61097000	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
10	chr7:61096400-61097000	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr7:61096600-61098000	ZNF genes & repeats	Liver	Liver
12	chr7:61097000-61099400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr7:61097200-61097800	ZNF genes & repeats	Psoas Muscle	Psoas
14	chr7:61097400-61098000	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
15	chr7:61097600-61098000	ZNF genes & repeats	Adipose Nuclei	Adipose
16	chr7:61097600-61098000	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
17	chr7:61097800-61099200	Weak transcription	Psoas Muscle	Psoas
18	chr7:61098000-61099200	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr7:61098000-61099400	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr7:61098000-61099400	Weak transcription	Liver	Liver
21	chr7:61098000-61099400	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr7:61098200-61099400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
23	chr7:61099200-61100400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr7:61099200-61100400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
25	chr7:61099200-61100400	ZNF genes & repeats	Psoas Muscle	Psoas
26	chr7:61099200-61100400	ZNF genes & repeats	Thymus	Thymus
27	chr7:61099400-61100000	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
28	chr7:61099400-61100200	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
29	chr7:61099400-61100200	ZNF genes & repeats	Rectal Smooth Muscle	rectum
30	chr7:61099400-61100400	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
31	chr7:61099400-61100400	ZNF genes & repeats	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr7:61099400-61100400	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr7:61099400-61100400	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
34	chr7:61099400-61100400	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
35	chr7:61099400-61100400	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
36	chr7:61099400-61100400	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
37	chr7:61099400-61100400	ZNF genes & repeats	Liver	Liver
38	chr7:61099400-61100400	ZNF genes & repeats	Brain Substantia Nigra	brain
39	chr7:61099400-61100400	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
40	chr7:61099400-61100400	Bivalent/Poised TSS	Right Ventricle	heart
41	chr7:61099400-61100400	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
42	chr7:61099600-61099800	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
43	chr7:61099600-61099800	ZNF genes & repeats	Placenta	Placenta
44	chr7:61099600-61099800	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle
45	chr7:61099600-61099800	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
46	chr7:61099600-61100200	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
47	chr7:61099600-61100200	ZNF genes & repeats	Adipose Nuclei	Adipose
48	chr7:61099600-61100200	ZNF genes & repeats	Colonic Mucosa	Colon
49	chr7:61099600-61100400	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr7:61099600-61100400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell

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