Variant report

Variant	esv3420135
Chromosome Location	chr3:160821883-160824431
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:190)
CpG islands
(count:917)
Chromatin interactive
region (count:8)
LncRNA
region (count:14)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:190 , 50 per page) page: 1 2 3 4

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	BACH1	chr3:160822337-160823250	H1-hESC	embryonic stem cell:	n/a	n/a
2	BRCA1	chr3:160822109-160822390	H1-hESC	embryonic stem cell:	n/a	n/a
3	CCNT2	chr3:160823104-160823304	K562	blood:	n/a	chr3:160823190-160823199
4	CEBPB	chr3:160822350-160822703	H1-hESC	embryonic stem cell:	n/a	n/a
5	CHD1	chr3:160822427-160822677	H1-hESC	embryonic stem cell:	n/a	n/a
6	CHD2	chr3:160822261-160822792	H1-hESC	embryonic stem cell:	n/a	n/a
7	CTBP2	chr3:160822389-160823317	H1-hESC	embryonic stem cell:	n/a	n/a
8	CTCF	chr3:160823151-160823309	MCF-7	breast:	n/a	n/a
9	CTCF	chr3:160822400-160822550	HRE	kidney:	n/a	n/a
10	CTCF	chr3:160823080-160823230	HUVEC	blood vessel:	n/a	n/a
11	CTCF	chr3:160822540-160822690	HEEpiC	esophagus:	n/a	n/a
12	CTCF	chr3:160822555-160822770	MCF-7	breast:	n/a	n/a
13	CTCF	chr3:160822400-160822550	GM12864	blood:	n/a	n/a
14	CTCF	chr3:160823211-160823220	H1-hESC	embryonic stem cell:	n/a	n/a
15	CTCF	chr3:160823164-160823311	GM10266	blood:	n/a	n/a
16	CTCF	chr3:160822860-160823010	SK-N-SH_RA	brain:	n/a	n/a
17	CTCF	chr3:160823240-160823390	GM12865	blood:	n/a	n/a
18	CTCF	chr3:160822663-160822700	GM13977	blood:	n/a	n/a
19	CTCF	chr3:160822720-160822870	AG04449	skin:	n/a	n/a
20	CTCF	chr3:160823101-160823327	GM19238	blood:	n/a	n/a
21	CTCF	chr3:160823177-160823258	GM10248	blood:	n/a	n/a
22	CTCF	chr3:160823165-160823291	GM12892	blood:	n/a	n/a
23	CTCF	chr3:160823160-160823310	SAEC	small airway:	n/a	n/a
24	CTCF	chr3:160823160-160823310	HRE	kidney:	n/a	n/a
25	CTCF	chr3:160823060-160823210	WERI-Rb-1	eye:	n/a	n/a
26	CTCF	chr3:160822800-160822950	HMEC	breast:	n/a	n/a
27	CTCF	chr3:160823060-160823210	GM12872	blood:	n/a	n/a
28	CTCF	chr3:160823197-160823275	ProgFib	skin:	n/a	n/a
29	CTCF	chr3:160822420-160822570	HCM	heart:	n/a	n/a
30	CTCF	chr3:160823280-160823430	GM12873	blood:	n/a	n/a
31	CTCF	chr3:160822320-160822470	AoAF	blood vessel:	n/a	n/a
32	CTCF	chr3:160822602-160822746	GM19239	blood:	n/a	n/a
33	CTCF	chr3:160822760-160822910	Caco-2	colon:	n/a	n/a
34	CTCF	chr3:160823098-160823307	MCF-7	breast:	n/a	n/a
35	CTCF	chr3:160822600-160822750	GM12875	blood:	n/a	n/a
36	CTCF	chr3:160823140-160823290	Caco-2	colon:	n/a	n/a
37	CTCF	chr3:160822500-160822650	HRE	kidney:	n/a	n/a
38	CTCF	chr3:160822540-160822690	GM12866	blood:	n/a	n/a
39	CTCF	chr3:160823196-160823263	Kidney_OC	kidney:	n/a	n/a
40	CTCF	chr3:160822480-160822630	GM12867	blood:	n/a	n/a
41	CTCF	chr3:160822280-160822430	AG10803	skin:	n/a	n/a
42	CTCF	chr3:160822260-160822410	AG04449	skin:	n/a	n/a
43	CTCF	chr3:160822760-160822910	GM12866	blood:	n/a	n/a
44	CTCF	chr3:160823189-160823263	Gliobla	brain:	n/a	n/a
45	CTCF	chr3:160822660-160822810	GM12870	blood:	n/a	n/a
46	CTCF	chr3:160822560-160822710	GM12874	blood:	n/a	n/a
47	CTCF	chr3:160823060-160823210	GM12866	blood:	n/a	n/a
48	CTCF	chr3:160822700-160822850	GM12866	blood:	n/a	n/a
49	CTCF	chr3:160823160-160823310	GM12871	blood:	n/a	n/a
50	CTCF	chr3:160823340-160823490	GM12869	blood:	n/a	n/a

(count:917 , 50 per page) page: 1 2 3 4 5 6 7 ... 19

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr3:160822720-160822770	GM19239	blood:	n/a
2	chr3:160823392-160823442	HRE	kidney:	n/a
3	chr3:160822720-160822770	GM19239	blood:	n/a
4	chr3:160823392-160823442	HRE	kidney:	n/a
5	chr3:160823387-160823437	HRPEpiC	eye:	n/a
6	chr3:160823255-160823305	NB4	blood:	n/a
7	chr3:160823318-160823368	SK-N-MC	brain:	n/a
8	chr3:160822545-160822595	K562	blood:	n/a
9	chr3:160822711-160822761	HEK293	kidney:	embryo
10	chr3:160822268-160822318	Caco-2	colon:	n/a
11	chr3:160823318-160823368	HL-60	blood:	n/a
12	chr3:160823505-160823555	HCM	heart:	n/a
13	chr3:160822268-160822318	SKMC	muscle:	n/a
14	chr3:160822545-160822595	HepG2	liver:	n/a
15	chr3:160823318-160823368	H1-hESC	embryonic stem cell:	embryo
16	chr3:160822711-160822761	ECC-1	luminal epithelium:	n/a
17	chr3:160823315-160823365	AG09319	gingival:	n/a
18	chr3:160822720-160822770	Caco-2	colon:	n/a
19	chr3:160823231-160823281	GM12891	blood:	n/a
20	chr3:160822545-160822595	AG04449	skin:	fetal
21	chr3:160822728-160822778	HPAEpiC	pulmonary alveolar:	n/a
22	chr3:160823231-160823281	HUVEC	blood vessel:	n/a
23	chr3:160823392-160823442	HL-60	blood:	n/a
24	chr3:160823318-160823368	NHBE	bronchial:	n/a
25	chr3:160823505-160823555	HRE	kidney:	n/a
26	chr3:160822423-160822473	GM12878	blood:	n/a
27	chr3:160822661-160822711	Caco-2	colon:	n/a
28	chr3:160822268-160822318	AG10803	skin:	n/a
29	chr3:160822545-160822595	HCPEpiC	choroid plexus:	n/a
30	chr3:160823231-160823281	SK-N-MC	brain:	n/a
31	chr3:160823318-160823368	GM12892	blood:	n/a
32	chr3:160822268-160822318	Hepatocyte	liver:	n/a
33	chr3:160823315-160823365	HUVEC	blood vessel:	n/a
34	chr3:160822720-160822770	NT2-D1	testis:	n/a
35	chr3:160822711-160822761	Hela-S3	cervix:	n/a
36	chr3:160822911-160822961	LNCaP	prostate:	n/a
37	chr3:160823318-160823368	SK-N-SH_RA	brain:	n/a
38	chr3:160822720-160822770	HRPEpiC	eye:	n/a
39	chr3:160822661-160822711	IMR90	lung:	fetal
40	chr3:160822711-160822761	HUVEC	blood vessel:	n/a
41	chr3:160823255-160823305	HRCEpiC	kidney:	n/a
42	chr3:160822423-160822473	Hepatocyte	liver:	n/a
43	chr3:160822728-160822778	HRE	kidney:	n/a
44	chr3:160822911-160822961	AG09309	skin:	n/a
45	chr3:160823318-160823368	GM12891	blood:	n/a
46	chr3:160822728-160822778	NT2-D1	testis:	n/a
47	chr3:160822661-160822711	BJ	skin:	n/a
48	chr3:160823505-160823555	HCF	heart:	n/a
49	chr3:160823392-160823442	PANC-1	pancreas:	n/a
50	chr3:160822268-160822318	LNCaP	prostate:	n/a

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:160813033..160824577-chr3:161083489..161092050,35	MCF-7	breast:
2	chr3:160823684..160825879-chr3:160830015..160833205,3	MCF-7	breast:
3	chr3:160824306..160825835-chr3:160990515..160993079,2	MCF-7	breast:
4	chr3:160821182..160827138-chr3:160937374..160941314,7	MCF-7	breast:
5	chr3:160818503..160825890-chr3:160937051..160945986,18	MCF-7	breast:
6	chr3:160824125..160825880-chr3:160827918..160829533,2	K562	blood:
7	chr3:160824011..160825629-chr3:161089025..161091868,3	MCF-7	breast:
8	chr3:160819969..160822199-chr3:161125222..161127254,2	MCF-7	breast:

(count:14 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-B3GALNT1-1	chr3:160823023-160823055	NONHSAT093007
2	lnc-B3GALNT1-1	chr3:160822107-160822194	NONHSAT093008
3	lnc-B3GALNT1-1	chr3:160822107-160822194	NONHSAT093005
4	lnc-B3GALNT1-1	chr3:160822573-160822683	NONHSAT093005
5	lnc-B3GALNT1-1	chr3:160823023-160823172	NONHSAT093006
6	lnc-B3GALNT1-1	chr3:160822107-160822194	NONHSAT093009
7	lnc-B3GALNT1-1	chr3:160822107-160822194	NONHSAT093007
8	lnc-B3GALNT1-1	chr3:160822791-160823033	NONHSAT093009
9	lnc-B3GALNT1-1	chr3:160823023-160823172	NONHSAT093005
10	lnc-B3GALNT1-1	chr3:160823023-160823093	NONHSAT093008
11	lnc-B3GALNT1-1	chr3:160821746-160821893	NONHSAT093007
12	lnc-B3GALNT1-1	chr3:160821746-160821893	NONHSAT093008
13	lnc-B3GALNT1-1	chr3:160822573-160822683	NONHSAT093008
14	lnc-B3GALNT1-1	chr3:160822107-160822194	NONHSAT093006

No data

Variant related genes	Relation type
B3GALNT1	TF binding region
NMD3	TF binding region
B3GALNT1	CpG island
NMD3	CpG island
ENSG00000169251	chromatin interactions
ENSG00000271052	chromatin interactions
ENSG00000196542	chromatin interactions

Extended variants
information (count: 96 )
Associated
traits (count: 58 )

Variant overlapped rSNPs/rCNVs (count:96 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs547351636	chr3:160821898-160821899	Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
2	rs377047275	chr3:160821901-160821902	Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
3	rs7651087	chr3:160821929-160821930	Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region	5 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
4	rs536239894	chr3:160821955-160821956	Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
5	rs184290952	chr3:160821962-160821963	Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
6	rs569764506	chr3:160821963-160821964	Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
7	rs7617204	chr3:160821969-160821970	Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region	5 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
8	rs139310181	chr3:160821974-160821975	Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
9	rs376691677	chr3:160822027-160822028	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
10	rs190148089	chr3:160822123-160822124	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	5 gene(s)	Overlapped CNVs	n/a
11	rs535358641	chr3:160822174-160822175	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	5 gene(s)	Overlapped CNVs	n/a
12	rs537858667	chr3:160822191-160822192	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	5 gene(s)	Overlapped CNVs	n/a
13	rs34032455	chr3:160822198-160822199	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	5 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
14	rs181884148	chr3:160822231-160822232	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
15	rs59776766	chr3:160822246-160822247	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer	TF binding region Chromatin interactive region	5 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
16	rs373900451	chr3:160822263-160822264	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
17	rs556130163	chr3:160822276-160822277	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
18	rs575077953	chr3:160822291-160822292	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
19	rs562573377	chr3:160822301-160822302	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
20	rs576171059	chr3:160822309-160822310	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
21	rs545108283	chr3:160822314-160822315	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
22	rs150002797	chr3:160822339-160822340	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
23	rs527489970	chr3:160822385-160822386	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
24	rs547708225	chr3:160822400-160822401	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
25	rs536126536	chr3:160822409-160822410	Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
26	rs532604197	chr3:160822417-160822418	Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
27	rs530107058	chr3:160822418-160822419	Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
28	rs554107732	chr3:160822421-160822422	Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
29	rs370678105	chr3:160822447-160822448	Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
30	rs572619000	chr3:160822502-160822503	Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
31	rs35911418	chr3:160822504-160822505	Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	5 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
32	rs187222463	chr3:160822521-160822522	Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
33	rs36046993	chr3:160822522-160822523	Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	5 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
34	rs190400083	chr3:160822560-160822561	Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
35	rs534897077	chr3:160822631-160822632	Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
36	rs555254354	chr3:160822677-160822678	Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
37	rs377644724	chr3:160822694-160822695	Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
38	rs140429789	chr3:160822715-160822716	Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
39	rs36204596	chr3:160822716-160822717	Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
40	rs568613322	chr3:160822767-160822768	Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
41	rs536268549	chr3:160822772-160822773	Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
42	rs556228978	chr3:160822790-160822791	Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
43	rs564171111	chr3:160822795-160822796	Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
44	rs545169537	chr3:160822799-160822800	Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
45	rs558357584	chr3:160822806-160822807	Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription	TF binding region Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
46	rs180740262	chr3:160822836-160822837	Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription	TF binding region Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
47	rs540819315	chr3:160822839-160822840	Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription	TF binding region Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
48	rs373494126	chr3:160822870-160822871	Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription	TF binding region Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
49	rs576162760	chr3:160822890-160822891	Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription	TF binding region Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
50	rs34262149	chr3:160822892-160822893	Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription	TF binding region Chromatin interactive region lncRNA	4 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:58)

Disease	PMID	Source
Basal cell lymphoma	17053054	CNVD
Esophageal cancer	21851588	CNVD
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Retinoblastoma	21504564	CNVD
Medulloblastoma	21979893	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Autism	22495311	CNVD
Lung cancer	18438408	CNVD
Squamous cell cancer	20885788	CNVD
Melanoma	18172304	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Breast cancer	22032731	CNVD
Breast cancer	16461572	CNVD
Neuroblastoma	17533364	CNVD
Cervical Cancer	21857958	CNVD
Melanoma	21693616	CNVD
Lung cancer	21426551	CNVD
Cancer	21637783	CNVD
Cervical cancer	21063398	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oral cancer	21386901	CNVD
Renal cell carcinoma	19461508	CNVD
Cancer	22065749	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Basal cell lymphoma	21115979	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Myelodysplastic syndrome	21251322	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Breast cancer	16608533	CNVD
Acute myeloid leukemia	20729466	CNVD
Non-small cell lung cancer	19010865	CNVD
abnormal development	18461090	CNVD
Prostate cancer	18632612	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Colorectal cancer	16272173	CNVD
Prostate cancer	16547154	CNVD
Breast cancer	21364760	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Prostate cancer	16573809	CNVD
Breast cancer	21785460	CNVD
Bladder cancer	21909424	CNVD
Myelofibrosis	22110671	CNVD
Intellectual disability	21811512	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD
Sudden cardiac death	19188705	CNVD
Mantle cell lymphoma	19029149	CNVD
Malformation	19546859	CNVD
Schizophrenia	19546859	CNVD
Breast cancer	17133270	CNVD

Chromatin state (count:389 , 50 per page) page: 1 2 3 4 5 6 7 8

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160781800-160822000	Weak transcription	Thymus	Thymus
2	chr3:160787000-160822000	Weak transcription	Primary T cells from cord blood	blood
3	chr3:160797000-160822000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr3:160799800-160822000	Weak transcription	HMEC	breast
5	chr3:160800400-160822200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr3:160800400-160822400	Weak transcription	Spleen	Spleen
7	chr3:160801200-160822000	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr3:160802600-160822000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr3:160802600-160822400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr3:160802800-160822000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr3:160803400-160822000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr3:160803800-160822000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr3:160804400-160822000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr3:160804400-160822000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr3:160804600-160822200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr3:160809000-160822200	Weak transcription	Psoas Muscle	Psoas
17	chr3:160813400-160822000	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr3:160816000-160822200	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr3:160817200-160822000	Weak transcription	Rectal Smooth Muscle	rectum
20	chr3:160817400-160822000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr3:160817800-160822000	Weak transcription	NHEK	skin
22	chr3:160818800-160822000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr3:160819000-160822200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr3:160819400-160822000	Weak transcription	Adipose Nuclei	Adipose
25	chr3:160819400-160822000	Weak transcription	Liver	Liver
26	chr3:160819400-160822000	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr3:160819400-160822000	Weak transcription	Esophagus	oesophagus
28	chr3:160819400-160822000	Weak transcription	Right Atrium	heart
29	chr3:160819400-160822200	Weak transcription	Gastric	stomach
30	chr3:160820000-160822000	Weak transcription	Duodenum Mucosa	Duodenum
31	chr3:160820000-160822000	Weak transcription	Fetal Intestine Large	intestine
32	chr3:160820000-160822200	Weak transcription	Placenta	Placenta
33	chr3:160820200-160822000	Weak transcription	Brain Hippocampus Middle	brain
34	chr3:160820600-160822000	Weak transcription	Primary hematopoietic stem cells	blood
35	chr3:160820600-160822000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr3:160820600-160822000	Weak transcription	Aorta	Aorta
37	chr3:160820800-160822000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr3:160820800-160822000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr3:160820800-160822000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr3:160820800-160822000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr3:160820800-160822000	Weak transcription	Brain Inferior Temporal Lobe	brain
42	chr3:160820800-160822000	Weak transcription	Ovary	ovary
43	chr3:160821000-160822000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr3:160821200-160822000	Weak transcription	Cortex derived primary cultured neurospheres	brain
45	chr3:160821400-160822000	Enhancers	Fetal Brain Male	brain
46	chr3:160821400-160822200	Flanking Active TSS	Fetal Heart	heart
47	chr3:160821600-160822000	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr3:160821600-160822000	Enhancers	Fetal Intestine Small	intestine
49	chr3:160821600-160822200	Enhancers	Pancreas	Pancrea
50	chr3:160821600-160823200	Active TSS	Right Ventricle	heart

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