Variant report

Variant	esv3420176
Chromosome Location	chr19:37130161-37207917
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1018)
CpG islands
(count:1465)
Chromatin interactive
region (count:38)
LncRNA
region (count:26)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1018 , 50 per page) page: 1 2 3 4 5 6 7 ... 21

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr19:37177857-37178885	HepG2	liver:	n/a	n/a
2	ARID3A	chr19:37178254-37178421	K562	blood:	n/a	n/a
3	ARID3A	chr19:37157624-37157960	HepG2	liver:	n/a	n/a
4	ATF2	chr19:37157511-37158137	GM12878	blood:	n/a	n/a
5	ATF2	chr19:37157440-37157961	H1-hESC	embryonic stem cell:	n/a	n/a
6	ATF2	chr19:37157544-37158071	H1-hESC	embryonic stem cell:	n/a	n/a
7	ATF2	chr19:37157624-37158042	GM12878	blood:	n/a	n/a
8	ATF3	chr19:37178167-37179119	A549	lung:	n/a	n/a
9	ATF3	chr19:37157420-37158064	A549	lung:	n/a	n/a
10	ATF3	chr19:37178280-37178522	K562	blood:	n/a	n/a
11	ATF3	chr19:37157169-37158069	A549	lung:	n/a	n/a
12	BACH1	chr19:37177969-37178912	H1-hESC	embryonic stem cell:	n/a	n/a
13	BCL3	chr19:37177611-37178935	A549	lung:	n/a	n/a
14	BCL3	chr19:37157115-37158253	A549	lung:	n/a	chr19:37157731-37157740
15	BCL3	chr19:37157171-37158092	A549	lung:	n/a	chr19:37157731-37157740
16	BCL3	chr19:37178207-37178634	GM12878	blood:	n/a	n/a
17	BCL3	chr19:37177178-37178903	A549	lung:	n/a	n/a
18	BCLAF1	chr19:37157461-37157998	GM12878	blood:	n/a	chr19:37157731-37157740
19	BCLAF1	chr19:37157378-37158088	GM12878	blood:	n/a	chr19:37157731-37157740
20	BCLAF1	chr19:37178007-37178651	GM12878	blood:	n/a	n/a
21	BHLHE40	chr19:37157432-37157982	GM12878	blood:	n/a	n/a
22	BHLHE40	chr19:37178126-37178687	K562	blood:	n/a	n/a
23	BHLHE40	chr19:37178057-37178751	GM12878	blood:	n/a	n/a
24	BRCA1	chr19:37157588-37158027	GM12878	blood:	n/a	n/a
25	BRCA1	chr19:37157602-37158062	HepG2	liver:	n/a	n/a
26	BRCA1	chr19:37178044-37178390	HepG2	liver:	n/a	n/a
27	BRCA1	chr19:37178184-37178469	H1-hESC	embryonic stem cell:	n/a	n/a
28	BRCA1	chr19:37178183-37178666	Hela-S3	cervix:	n/a	n/a
29	CBX3	chr19:37157623-37157886	K562	blood:	n/a	n/a
30	CCNT2	chr19:37178114-37178749	K562	blood:	n/a	n/a
31	CEBPB	chr19:37137971-37138251	A549	lung:	n/a	chr19:37138135-37138146
32	CEBPB	chr19:37182511-37183036	A549	lung:	n/a	chr19:37182848-37182859
33	CEBPB	chr19:37134629-37134781	IMR90	lung:	n/a	chr19:37134735-37134746
34	CEBPB	chr19:37134582-37134819	A549	lung:	n/a	chr19:37134735-37134746
35	CEBPB	chr19:37157361-37158037	A549	lung:	n/a	n/a
36	CEBPB	chr19:37157601-37158139	MCF-7	breast:	n/a	n/a
37	CEBPB	chr19:37178378-37178675	HepG2	liver:	n/a	n/a
38	CEBPB	chr19:37182649-37183019	Hela-S3	cervix:	n/a	chr19:37182848-37182859
39	CEBPB	chr19:37157278-37158143	A549	lung:	n/a	n/a
40	CEBPB	chr19:37157418-37158025	IMR90	lung:	n/a	n/a
41	CEBPB	chr19:37138098-37138273	IMR90	lung:	n/a	chr19:37138135-37138146
42	CEBPB	chr19:37157611-37158033	A549	lung:	n/a	n/a
43	CEBPB	chr19:37183239-37183363	A549	lung:	n/a	n/a
44	CEBPB	chr19:37138026-37138255	HepG2	liver:	n/a	chr19:37138135-37138146
45	CEBPB	chr19:37182668-37183020	HepG2	liver:	n/a	chr19:37182848-37182859
46	CEBPB	chr19:37155863-37156132	HepG2	liver:	n/a	chr19:37155959-37155970
47	CEBPB	chr19:37155815-37156123	A549	lung:	n/a	chr19:37155959-37155970
48	CEBPB	chr19:37157422-37158019	HepG2	liver:	n/a	n/a
49	CEBPB	chr19:37141937-37142414	HepG2	liver:	n/a	n/a
50	CEBPB	chr19:37134573-37134789	HepG2	liver:	n/a	chr19:37134735-37134746

(count:1465 , 50 per page) page: 1 2 3 4 5 6 7 ... 30

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr19:37154552-37154602	HCT-116	colon:	n/a
2	chr19:37154552-37154602	HCT-116	colon:	n/a
3	chr19:37175471-37175521	PANC-1	pancreas:	n/a
4	chr19:37157565-37157615	AG09319	gingival:	n/a
5	chr19:37157945-37157995	RPTEC	kidney:	n/a
6	chr19:37157995-37158045	MCF10A-Er-Src	breast:	n/a
7	chr19:37157633-37157683	HCM	heart:	n/a
8	chr19:37177866-37177916	SKMC	muscle:	n/a
9	chr19:37157861-37157911	GM12891	blood:	n/a
10	chr19:37178489-37178539	PANC-1	pancreas:	n/a
11	chr19:37178943-37178993	HCF	heart:	n/a
12	chr19:37175471-37175521	HRCEpiC	kidney:	n/a
13	chr19:37177866-37177916	K562	blood:	n/a
14	chr19:37157995-37158045	AG04450	lung:	fetal
15	chr19:37178943-37178993	HEK293	kidney:	embryo
16	chr19:37157861-37157911	HCF	heart:	n/a
17	chr19:37177866-37177916	HCF	heart:	n/a
18	chr19:37159208-37159258	PFSK-1	brain:	n/a
19	chr19:37177866-37177916	BE2_C	brain:	n/a
20	chr19:37178105-37178155	HPAEpiC	pulmonary alveolar:	n/a
21	chr19:37157995-37158045	AG09309	skin:	n/a
22	chr19:37177866-37177916	HMEC	breast:	n/a
23	chr19:37157945-37157995	GM12891	blood:	n/a
24	chr19:37177866-37177916	BJ	skin:	n/a
25	chr19:37157776-37157826	GM12878	blood:	n/a
26	chr19:37157318-37157368	GM12891	blood:	n/a
27	chr19:37157721-37157771	HAEpiC	amniotic membrane:	n/a
28	chr19:37157633-37157683	Jurkat	blood:	n/a
29	chr19:37157318-37157368	HCF	heart:	n/a
30	chr19:37157945-37157995	U87	brain:	n/a
31	chr19:37183199-37183249	MCF-7	breast:	n/a
32	chr19:37178489-37178539	SAEC	small airway:	n/a
33	chr19:37178411-37178461	AG09319	gingival:	n/a
34	chr19:37157847-37157897	SK-N-MC	brain:	n/a
35	chr19:37178943-37178993	RPTEC	kidney:	n/a
36	chr19:37178174-37178224	HNPCEpiC	eye:	n/a
37	chr19:37178105-37178155	ECC-1	luminal epithelium:	n/a
38	chr19:37154552-37154602	IMR90	lung:	fetal
39	chr19:37178105-37178155	K562	blood:	n/a
40	chr19:37157565-37157615	NHBE	bronchial:	n/a
41	chr19:37154552-37154602	HCM	heart:	n/a
42	chr19:37157945-37157995	GM12878	blood:	n/a
43	chr19:37183199-37183249	HCF	heart:	n/a
44	chr19:37177866-37177916	PrEC	prostate:	n/a
45	chr19:37157633-37157683	ProgFib	skin:	n/a
46	chr19:37178884-37178934	T-47D	breast:	n/a
47	chr19:37178411-37178461	HRPEpiC	eye:	n/a
48	chr19:37154552-37154602	HAEpiC	amniotic membrane:	n/a
49	chr19:37178174-37178224	HIPEpiC	eye:	n/a
50	chr19:37178943-37178993	HRCEpiC	kidney:	n/a

(count:38 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr19:16738748..16739541-chr19:37178086..37179072,2	Hela-S3	cervix:
2	chr17:56709026..56709600-chr19:37157802..37158503,2	MCF-7	breast:
3	chr17:45973368..45973979-chr19:37178763..37179345,2	Hela-S3	cervix:
4	chr19:37157483..37161085-chr19:37175435..37180024,4	MCF-7	breast:
5	chr19:37184109..37186391-chr19:37262540..37264096,2	MCF-7	breast:
6	chr19:36978907..36980878-chr19:37142298..37144775,2	K562	blood:
7	chr19:37018139..37019685-chr19:37156038..37157932,2	MCF-7	breast:
8	chr19:37180811..37182486-chr19:37182831..37185774,2	MCF-7	breast:
9	chr19:37160578..37163087-chr19:37165819..37168377,2	MCF-7	breast:
10	chr19:36977782..36980646-chr19:37176349..37177933,2	K562	blood:
11	chr19:37170168..37172761-chr19:37172837..37175354,2	MCF-7	breast:
12	chr19:37158057..37159719-chr19:37162849..37165565,2	MCF-7	breast:
13	chr19:37158057..37159719-chr19:37162849..37165565,2	MCF-7	breast:
14	chr19:37155855..37159234-chr19:37160019..37162576,3	MCF-7	breast:
15	chr19:37180811..37182486-chr19:37182831..37185774,2	MCF-7	breast:
16	chr19:37171965..37174267-chr19:37175474..37177630,2	K562	blood:
17	chr19:37177678..37180392-chr19:37181759..37186073,4	K562	blood:
18	chr19:37167853..37170740-chr19:37177122..37180031,2	K562	blood:
19	chr19:37181989..37183751-chr19:37185585..37187447,2	K562	blood:
20	chr19:37129696..37132146-chr19:37158432..37159959,2	K562	blood:
21	chr19:37177479..37179170-chr19:37187073..37188900,2	MCF-7	breast:
22	chr19:37171965..37174267-chr19:37175474..37177630,2	K562	blood:
23	chr19:37062686..37064573-chr19:37176993..37178796,2	MCF-7	breast:
24	chr19:37178059..37180206-chr19:37184141..37185647,2	MCF-7	breast:
25	chr19:37201484..37203219-chr19:37205310..37207219,2	K562	blood:
26	chr19:37157483..37161085-chr19:37175435..37180024,4	MCF-7	breast:
27	chr19:37169916..37172252-chr19:37176189..37178987,2	MCF-7	breast:
28	chr19:37170168..37172761-chr19:37172837..37175354,2	MCF-7	breast:
29	chr19:37160578..37163087-chr19:37165819..37168377,2	MCF-7	breast:
30	chr19:36705027..36707515-chr19:37176765..37178367,2	MCF-7	breast:
31	chr19:37181989..37183751-chr19:37185585..37187447,2	K562	blood:
32	chr19:37177766..37179816-chr19:37265277..37267800,2	MCF-7	breast:
33	chr19:37176901..37179127-chr19:37187369..37189594,2	K562	blood:
34	chr19:37038036..37040830-chr19:37176881..37179372,3	MCF-7	breast:
35	chr19:37176901..37179130-chr19:37188075..37189594,2	K562	blood:
36	chr19:37171917..37174270-chr19:37177933..37180774,2	K562	blood:
37	chr19:37156941..37159491-chr19:37161171..37163007,2	MCF-7	breast:
38	chr19:37178528..37181620-chr19:37184427..37188205,4	MCF-7	breast:

(count:26 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF461-1	chr19:37176739-37176917	ENSG00000225975.1
2	lnc-ZNF461-1	chr19:37177588-37177708	ENSG00000225975.2
3	lnc-ZNF461-1	chr19:37177329-37177708	ENSG00000225975.2
4	lnc-ZNF461-1	chr19:37176367-37176917	ENSG00000225975.2
5	lnc-ZNF382-1	chr19:37130606-37130950	ENSG00000232819
6	lnc-ZNF461-4	chr19:37162902-37163384	l_1676_chr19:37148392-37193298_testes
7	lnc-ZNF461-1	chr19:37173807-37176917	NONHSAT066036
8	lnc-ZNF461-1	chr19:37177588-37177708	NONHSAT066036
9	lnc-ZNF461-1	chr19:37178170-37178312	ENSG00000225975.1
10	lnc-ZNF461-1	chr19:37176342-37176413	ENSG00000225975.1
11	lnc-ZNF461-1	chr19:37178170-37178326	NONHSAT066037
12	lnc-ZNF461-1	chr19:37175695-37176413	NONHSAT066037
13	lnc-ZNF461-1	chr19:37177588-37177708	ENSG00000225975.1
14	lnc-ZNF461-4	chr19:37150031-37150379	l_1676_chr19:37148392-37193298_testes
15	lnc-ZNF461-1	chr19:37178170-37178339	ENSG00000225975.2
16	lnc-ZNF461-1	chr19:37177588-37177708	ENSG00000225975.1
17	lnc-ZNF461-1	chr19:37177588-37177708	NONHSAT066037
18	lnc-ZNF461-4	chr19:37185205-37185518	l_1676_chr19:37148392-37193298_testes
19	lnc-ZNF461-4	chr19:37148393-37148670	l_1676_chr19:37148392-37193298_testes
20	lnc-ZNF461-4	chr19:37149448-37149628	l_1676_chr19:37148392-37193298_testes
21	lnc-ZNF461-4	chr19:37193170-37193302	l_1676_chr19:37148392-37193298_testes
22	lnc-ZNF461-1	chr19:37176216-37176917	ENSG00000225975.1
23	lnc-ZNF461-1	chr19:37178170-37178312	ENSG00000225975.2
24	lnc-ZNF461-1	chr19:37176739-37176872	NONHSAT066037
25	lnc-ZNF461-1	chr19:37178170-37178518	NONHSAT066036
26	lnc-ZNF461-1	chr19:37178170-37178351	ENSG00000225975.1

No data

Variant related genes	Relation type
ZNF567	TF binding region
ZNF461	TF binding region
ENSG00000225975	TF binding region
ZNF567	CpG island
ZNF461	CpG island
ENSG00000225975	CpG island
ENSG00000225975	chromatin interactions
ENSG00000267309	chromatin interactions
ENSG00000267260	chromatin interactions
ENSG00000186020	chromatin interactions
ENSG00000167635	chromatin interactions
ENSG00000228629	chromatin interactions
ENSG00000196357	chromatin interactions
ENSG00000233527	chromatin interactions
ENSG00000254004	chromatin interactions
ENSG00000267353	chromatin interactions
ENSG00000141979	chromatin interactions
ENSG00000105085	chromatin interactions
ENSG00000167182	chromatin interactions
ENSG00000267041	chromatin interactions
ENSG00000212195	chromatin interactions
ENSG00000189042	chromatin interactions
ENSG00000186017	chromatin interactions
ENSG00000197808	chromatin interactions
BBS7	miRNA target sites

Extended variants
information (count: 2429 )
Associated
traits (count: 57 )

Variant overlapped rSNPs/rCNVs (count:2429 , 50 per page) page: 1 2 3 4 5 6 7 ... 49

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs192178468	chr19:37130187-37130188	ZNF genes & repeats Strong transcription Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
2	rs531868523	chr19:37130192-37130193	ZNF genes & repeats Strong transcription Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
3	rs373768137	chr19:37130201-37130202	ZNF genes & repeats Strong transcription Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
4	rs367661214	chr19:37130224-37130225	ZNF genes & repeats Strong transcription Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
5	rs550088228	chr19:37130248-37130249	ZNF genes & repeats Strong transcription Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
6	rs571720319	chr19:37130284-37130285	ZNF genes & repeats Strong transcription Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
7	rs200038545	chr19:37130310-37130311	ZNF genes & repeats Strong transcription Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
8	rs368477001	chr19:37130317-37130318	ZNF genes & repeats Strong transcription Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
9	rs557523264	chr19:37130325-37130326	ZNF genes & repeats Strong transcription Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
10	rs60794053	chr19:37130326-37130327	ZNF genes & repeats Strong transcription Weak transcription	TF binding region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
11	rs376344953	chr19:37130337-37130338	ZNF genes & repeats Strong transcription Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
12	rs111599753	chr19:37130344-37130345	ZNF genes & repeats Strong transcription Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
13	rs201010345	chr19:37130357-37130358	ZNF genes & repeats Strong transcription Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
14	rs144181720	chr19:37130398-37130399	ZNF genes & repeats Strong transcription Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
15	rs374655079	chr19:37130406-37130407	ZNF genes & repeats Strong transcription Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
16	rs555389760	chr19:37130418-37130419	ZNF genes & repeats Strong transcription Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
17	rs61746298	chr19:37130419-37130420	ZNF genes & repeats Strong transcription Weak transcription	TF binding region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
18	rs140064377	chr19:37130432-37130433	ZNF genes & repeats Strong transcription Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
19	rs201668289	chr19:37130433-37130434	ZNF genes & repeats Strong transcription Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
20	rs367814202	chr19:37130468-37130469	ZNF genes & repeats Strong transcription Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
21	rs200225317	chr19:37130490-37130491	ZNF genes & repeats Strong transcription Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
22	rs375529284	chr19:37130508-37130509	ZNF genes & repeats Strong transcription Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
23	rs368534825	chr19:37130510-37130511	ZNF genes & repeats Strong transcription Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
24	rs372489382	chr19:37130535-37130536	ZNF genes & repeats Strong transcription Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
25	rs199616878	chr19:37130538-37130539	ZNF genes & repeats Strong transcription Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
26	rs375465810	chr19:37130561-37130562	ZNF genes & repeats Strong transcription Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
27	rs556516008	chr19:37130599-37130600	ZNF genes & repeats Strong transcription Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
28	rs369464461	chr19:37130600-37130601	ZNF genes & repeats Strong transcription Weak transcription Active TSS	TF binding region	1 gene(s)	Overlapped CNVs	n/a
29	rs371730559	chr19:37130631-37130632	ZNF genes & repeats Strong transcription Weak transcription Active TSS	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
30	rs112092860	chr19:37130696-37130697	ZNF genes & repeats Strong transcription Weak transcription Active TSS	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
31	rs556331622	chr19:37130718-37130719	ZNF genes & repeats Strong transcription Weak transcription Active TSS	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
32	rs374942056	chr19:37130721-37130722	ZNF genes & repeats Strong transcription Weak transcription Active TSS	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
33	rs577720915	chr19:37130723-37130724	ZNF genes & repeats Strong transcription Weak transcription Active TSS	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
34	rs368953176	chr19:37130750-37130751	ZNF genes & repeats Strong transcription Weak transcription Active TSS	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
35	rs372487772	chr19:37130751-37130752	ZNF genes & repeats Strong transcription Weak transcription Active TSS	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
36	rs539546227	chr19:37130786-37130787	ZNF genes & repeats Strong transcription Weak transcription Active TSS	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
37	rs372163679	chr19:37130788-37130789	ZNF genes & repeats Strong transcription Weak transcription Active TSS	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
38	rs201188511	chr19:37130804-37130805	ZNF genes & repeats Strong transcription Weak transcription Active TSS	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
39	rs545189159	chr19:37130811-37130812	ZNF genes & repeats Strong transcription Weak transcription Active TSS	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
40	rs202104365	chr19:37130820-37130821	ZNF genes & repeats Strong transcription Weak transcription Active TSS	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
41	rs560133085	chr19:37130822-37130823	ZNF genes & repeats Strong transcription Weak transcription Active TSS	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
42	rs373853724	chr19:37130832-37130833	ZNF genes & repeats Strong transcription Weak transcription Active TSS	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
43	rs10412527	chr19:37130903-37130904	ZNF genes & repeats Strong transcription Weak transcription Active TSS	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
44	rs578036233	chr19:37130940-37130941	ZNF genes & repeats Strong transcription Weak transcription Active TSS	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
45	rs545331263	chr19:37130954-37130955	ZNF genes & repeats Strong transcription Weak transcription Active TSS	TF binding region	1 gene(s)	Overlapped CNVs	n/a
46	rs542746080	chr19:37130973-37130974	ZNF genes & repeats Strong transcription Weak transcription Active TSS	TF binding region	1 gene(s)	Overlapped CNVs	n/a
47	rs560923282	chr19:37130980-37130981	ZNF genes & repeats Strong transcription Weak transcription Active TSS	TF binding region	1 gene(s)	Overlapped CNVs	n/a
48	rs145559994	chr19:37130987-37130988	ZNF genes & repeats Strong transcription Weak transcription Active TSS	TF binding region	1 gene(s)	Overlapped CNVs	n/a
49	rs148888466	chr19:37130988-37130989	ZNF genes & repeats Strong transcription Weak transcription Active TSS	TF binding region	1 gene(s)	Overlapped CNVs	n/a
50	rs571913226	chr19:37131047-37131048	ZNF genes & repeats Weak transcription Strong transcription Active TSS	TF binding region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:57)

Disease	PMID	Source
Myelodysplastic syndrome	17634407	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Retinoblastoma	21504564	CNVD
Medulloblastoma	21979893	CNVD
Ovarian cancer	21720365	CNVD
Cancer	20164919	CNVD
Thoracic aortic aneurysm	21092924	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Prostate cancer	18632612	CNVD
Autism	22495311	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Ductal carcinoma	22052326	CNVD
Pleomorphic liposarcoma	18784837	CNVD
Congenital nephrotic syndrome	18421352	CNVD
Astrocytoma	17934521	CNVD
Leukemia	17361228	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Breast cancer	21858162	CNVD
Breast cancer	17603634	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Oligodendroglial tumors	17285580	CNVD
renal disease	20603712	CNVD
Salivary gland adenoid cystic carcinoma	17545515	CNVD
Disorders of sex development	21048976	CNVD
Ovarian cancer	22174824	CNVD
Breast cancer	16608533	CNVD
Neuroblastoma	18923191	CNVD
Breast cancer	21364760	CNVD
Invasive pancreatic ductal carcinoma	18765526	CNVD
Rhabdomyosarcoma	16790082	CNVD
Chordoma	18071362	CNVD
Urothelial carcinoma	21177765	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Glioma	17123091	CNVD
Basal cell lymphoma	19029149	CNVD
Diffuse large b-cell lymphoma	19029149	CNVD
Multiple myeloma	16616336	CNVD
Wilms tumour	21544195	CNVD
Mental retardation	19951919	CNVD
19q13.11 deletion syndrome	22378287	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	21045282	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Ovarian neoplasms	16753589	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Metanephric adenoma	20802469	CNVD
Acute myeloid leukemia	16864856	CNVD

Chromatin state (count:3626 , 50 per page) page: 1 2 3 4 5 6 7 ... 73

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:37098000-37156000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr19:37102200-37135200	ZNF genes & repeats	Fetal Brain Female	brain
3	chr19:37106800-37151000	ZNF genes & repeats	Adipose Nuclei	Adipose
4	chr19:37106800-37156200	ZNF genes & repeats	Liver	Liver
5	chr19:37107000-37134800	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr19:37107000-37152400	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
7	chr19:37107800-37134600	ZNF genes & repeats	Brain Anterior Caudate	brain
8	chr19:37110400-37152600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr19:37115400-37131800	ZNF genes & repeats	Left Ventricle	heart
10	chr19:37121400-37134600	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
11	chr19:37121600-37135200	ZNF genes & repeats	Brain Hippocampus Middle	brain
12	chr19:37122600-37139800	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
13	chr19:37122800-37134800	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
14	chr19:37124600-37134600	ZNF genes & repeats	Brain Substantia Nigra	brain
15	chr19:37124800-37155600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
16	chr19:37125000-37134600	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
17	chr19:37125000-37134600	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
18	chr19:37126000-37134600	ZNF genes & repeats	Duodenum Mucosa	Duodenum
19	chr19:37126200-37134600	ZNF genes & repeats	Brain Cingulate Gyrus	brain
20	chr19:37126200-37156200	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr19:37126400-37136200	ZNF genes & repeats	Brain Germinal Matrix	brain
22	chr19:37127000-37134400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
23	chr19:37127000-37140000	ZNF genes & repeats	Ovary	ovary
24	chr19:37127200-37131600	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
25	chr19:37127200-37131600	ZNF genes & repeats	Colon Smooth Muscle	Colon
26	chr19:37127200-37134600	ZNF genes & repeats	Muscle Satellite Cultured Cells	--
27	chr19:37127200-37134600	ZNF genes & repeats	A549	lung
28	chr19:37127200-37134800	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr19:37127200-37141000	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr19:37127200-37151000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr19:37127400-37132000	ZNF genes & repeats	Stomach Smooth Muscle	stomach
32	chr19:37127400-37135400	ZNF genes & repeats	Dnd41	blood
33	chr19:37127600-37131600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr19:37127800-37131600	ZNF genes & repeats	HSMM	muscle
35	chr19:37128000-37134600	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
36	chr19:37128200-37130400	ZNF genes & repeats	Placenta	Placenta
37	chr19:37128200-37130800	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
38	chr19:37128200-37150600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr19:37128400-37131000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr19:37128400-37131600	ZNF genes & repeats	Primary T cells from cord blood	blood
41	chr19:37128400-37134800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
42	chr19:37128600-37130800	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
43	chr19:37128600-37131200	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
44	chr19:37128600-37131200	ZNF genes & repeats	Fetal Brain Male	brain
45	chr19:37128600-37131600	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr19:37128600-37132200	Weak transcription	Lung	lung
47	chr19:37128600-37134800	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
48	chr19:37128600-37149600	ZNF genes & repeats	Primary B cells from peripheral blood	blood
49	chr19:37128800-37131600	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr19:37128800-37135200	ZNF genes & repeats	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links