Variant report

Variant	esv3420871
Chromosome Location	chr11:26585876-26586874
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:26586123..26588285-chr11:26619056..26621228,2	K562	blood:

Extended variants
information (count: 49 )
Associated
traits (count: 53 )

Variant overlapped rSNPs/rCNVs (count:49 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs564478470	chr11:26585877-26585878	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs11029617	chr11:26585904-26585905	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
3	rs569520325	chr11:26585930-26585931	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs540030617	chr11:26585937-26585938	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs115891049	chr11:26585963-26585964	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs201321590	chr11:26585979-26585980	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs537755844	chr11:26586027-26586028	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs183401766	chr11:26586050-26586051	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs549283317	chr11:26586054-26586055	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs541039777	chr11:26586219-26586220	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs370277580	chr11:26586239-26586240	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs12808665	chr11:26586241-26586242	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs187305726	chr11:26586269-26586270	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs10835003	chr11:26586279-26586280	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs11029618	chr11:26586281-26586282	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs200983275	chr11:26586311-26586312	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs202233143	chr11:26586313-26586314	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs200002214	chr11:26586315-26586316	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs552657686	chr11:26586320-26586321	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs574684148	chr11:26586322-26586323	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs66510170	chr11:26586323-26586324	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs541673691	chr11:26586324-26586325	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs563237530	chr11:26586326-26586327	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs117208656	chr11:26586364-26586365	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs545578093	chr11:26586369-26586370	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs191699497	chr11:26586374-26586375	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs528544024	chr11:26586461-26586462	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs74347211	chr11:26586533-26586534	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs567249833	chr11:26586545-26586546	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs561888313	chr11:26586565-26586566	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs78056219	chr11:26586573-26586574	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs372603012	chr11:26586577-26586578	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs7949311	chr11:26586625-26586626	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs569557171	chr11:26586637-26586638	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs145156749	chr11:26586699-26586700	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs375369150	chr11:26586716-26586717	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs551978683	chr11:26586717-26586718	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs570539672	chr11:26586728-26586729	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs139953401	chr11:26586729-26586730	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs552934625	chr11:26586752-26586753	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs574394650	chr11:26586768-26586769	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs143516436	chr11:26586776-26586777	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs146658130	chr11:26586796-26586797	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs15783	chr11:26586801-26586802	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
45	rs267602834	chr11:26586820-26586821	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs143492277	chr11:26586826-26586827	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs575173909	chr11:26586830-26586831	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs2292290	chr11:26586855-26586856	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs182567780	chr11:26586861-26586862	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:53)

Disease	PMID	Source
Burkitt''s lymphoma	19759907	CNVD
Breast cancer	17603634	CNVD
Medulloblastoma	21979893	CNVD
Thyroid cancer	19087340	CNVD
Melanoma	18172304	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Wilms tumour	21544195	CNVD
Parathyroid adenoma	22454399	CNVD
Chordoma	21602918	CNVD
Breast cancer	21949216	CNVD
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	19222835	CNVD
T-cell acute lymphoblastic leukemia	20065082	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Beckwith-Wiedemann syndrome	21518781	CNVD
Wilms tumour	21518781	CNVD
Hepatoblastoma	21518781	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Paraganglioma	17535989	CNVD
Pulmonary chondroma	17535989	CNVD
Gastric cancer	17908304	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Multiple myeloma	20724749	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Autism	22495311	CNVD
Prostate cancer	18632612	CNVD
Lung cancer	18438408	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Non-small cell lung cancer	21385341	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	21785460	CNVD
Medulloblastoma	16783165	CNVD
small cell lung cancer	20016488	CNVD
Congenital diaphragmatic hernia	21525063	CNVD
Renal cell carcinoma	18194544	CNVD
Potocki-Shaffer syndrome	19222835	CNVD
WAGR syndrome	19222835	CNVD
Chordoma	18071362	CNVD
Autism	22102821	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Breast cancer	21364760	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
Neuroticism	17667963	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26565000-26599200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr11:26579800-26592600	Weak transcription	Placenta	Placenta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links