Variant report

Variant	esv3421177
Chromosome Location	chr8:35104310-35107108
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 108 )
Associated
traits (count: 116 )

Variant overlapped rSNPs/rCNVs (count:108 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs190883762	chr8:35104379-35104380	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs563287183	chr8:35104393-35104394	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs183391154	chr8:35104441-35104442	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs530715509	chr8:35104452-35104453	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs374527826	chr8:35104468-35104469	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs571926818	chr8:35104475-35104476	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs369771268	chr8:35104494-35104495	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs76842039	chr8:35104511-35104512	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs150224010	chr8:35104516-35104517	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs560823440	chr8:35104523-35104524	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs531396887	chr8:35104524-35104525	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs1554859	chr8:35104545-35104546	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
13	rs138789429	chr8:35104546-35104547	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs532124864	chr8:35104579-35104580	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs548145204	chr8:35104642-35104643	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs187411351	chr8:35104699-35104700	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs536840139	chr8:35104714-35104715	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs548719653	chr8:35104733-35104734	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs200972684	chr8:35104752-35104753	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs386412550	chr8:35104753-35104754	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs372813599	chr8:35104754-35104755	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs370109095	chr8:35104755-35104756	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs201120885	chr8:35104756-35104757	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs202207517	chr8:35104757-35104758	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs200539391	chr8:35104758-35104759	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs5890801	chr8:35104795-35104796	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs77983265	chr8:35104806-35104807	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs62503913	chr8:35104808-35104809	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs570139277	chr8:35104863-35104864	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs142259936	chr8:35104895-35104896	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs558760227	chr8:35104916-35104917	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs576859687	chr8:35104929-35104930	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs11781624	chr8:35104953-35104954	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
34	rs553673528	chr8:35104967-35104968	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs372441372	chr8:35105015-35105016	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs542466495	chr8:35105032-35105033	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs561178503	chr8:35105036-35105037	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs145874181	chr8:35105038-35105039	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs62503914	chr8:35105040-35105041	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs10105122	chr8:35105042-35105043	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs532163785	chr8:35105044-35105045	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs112383675	chr8:35105086-35105087	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs540977973	chr8:35105091-35105092	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs562119577	chr8:35105097-35105098	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs13260977	chr8:35105155-35105156	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs11778552	chr8:35105190-35105191	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs10105246	chr8:35105192-35105193	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs11778557	chr8:35105225-35105226	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs11779270	chr8:35105260-35105261	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs530456087	chr8:35105284-35105285	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:116)

Disease	PMID	Source
Salivary gland tumor	18059337	CNVD
Breast cancer	17133270	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Prostate cancer	16573809	CNVD
Melanoma	18172304	CNVD
Medulloblastoma	21979893	CNVD
Chronic lymphocytic leukemia	18922857	CNVD
Breast cancer	17393978	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Breast cancer	20837533	CNVD
Squamous cell cancer	21044232	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Cancer	22429812	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Colorectal cancer	20709793	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Basal cell lymphoma	21115979	CNVD
Breast cancer	21264507	CNVD
Carcinoma ex pleomorphic adenoma	18828159	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oral cancer	21386901	CNVD
Prostate cancer	21088497	CNVD
Prostate cancer	21965145	CNVD
Breast cancer	20940404	CNVD
Colorectal cancer	19359472	CNVD
Embryonal rhabdomyosarcoma	16790082	CNVD
Gastric cancer	17167181	CNVD
Prostate cancer	16705090	CNVD
8p-syndrome	17576883	CNVD
Colorectal cancer	16272173	CNVD
Human rectal carcinomas	16397240	CNVD
Medulloblastoma	16968546	CNVD
Lung adenocarcinoma	19525976	CNVD
Lung cancer	19525976	CNVD
Prostate cancer	17245344	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Cancer	16751803	CNVD
Wilms tumour	21544195	CNVD
Gastric cancer	17908304	CNVD
Autism	19415332	CNVD
Malaria	21533027	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Esophageal cancer	21851588	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Breast cancer	21245420	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
Breast cancer	21785460	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Acute myeloid leukemia	20729466	CNVD
Breast cancer	21509527	CNVD
Acute myeloid leukemia	21251322	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	21858162	CNVD
lymphocytic leukemia	21291569	CNVD
Liver carcinoma	19366792	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Seminomas	18059402	CNVD
Lung cancer	18438408	CNVD
Gastrointestinal stromal cancer	19259404	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Myxofibrosarcoma	16751306	CNVD
Immune disease	21572526	CNVD
Non-small cell lung cancer	21829676	CNVD
Ovarian neoplasms	16753589	CNVD
Kallmann Syndrome 2	22470819	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Pancreatic cancer	21811587	CNVD
Multiple myeloma	16461302	CNVD
Developmental delay	21373258	CNVD
Thyroid cancer	19087340	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	17603634	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Multiple myeloma	16616336	CNVD
Melanoma	20688739	CNVD
Disorders of sex development	21048976	CNVD
Testicular cancer	18059402	CNVD
Breast cancer	21806811	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Hepatocellular carcinoma	16750200	CNVD
Bladder cancer	19088036	CNVD
Urothelial carcinoma	21177765	CNVD
Breast cancer	20459607	CNVD
Renal cell carcinoma	18765545	CNVD
Colorectal cancer	16912164	CNVD
Neuroticism	17667963	CNVD
Non-muscle invasive bladder neoplasm	19445696	CNVD
Breast cancer	17001308	CNVD
Breast cancer	17157792	CNVD
Cancer	17001308	CNVD
Cancer	18840272	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Chordoma	18071362	CNVD
Urothelial carcinoma	18382360	CNVD
Ductal carcinoma	18381933	CNVD
Breast cancer	21328542	CNVD
Squamous cell cancer	20885788	CNVD
Hirschsprung''s Disease	21712996	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Intellectual disability	22045946	CNVD
Lung cancer	17925434	CNVD
Uveal melanoma	20484589	CNVD
Breast cancer	16608533	CNVD
Breast cancer	21364760	CNVD
Ewing''s sarcoma	17952124	CNVD

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:35096000-35135400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr8:35096400-35117400	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr8:35097200-35108400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr8:35097600-35124000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr8:35098800-35117600	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr8:35100800-35123800	Weak transcription	Fetal Brain Female	brain
7	chr8:35101200-35107200	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr8:35101200-35111400	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr8:35101200-35116600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr8:35101200-35120200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr8:35101400-35108200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr8:35101400-35111400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr8:35103800-35116400	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr8:35104000-35104600	Enhancers	H9 Cell Line	embryonic stem cell
15	chr8:35104200-35104400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr8:35104400-35124000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr8:35104600-35117600	Weak transcription	H9 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links