Variant report

Variant	esv3421295
Chromosome Location	chr22:20322577-20325125
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ELF1	chr22:20324133-20324398	K562	blood:	n/a	n/a
2	GATA2	chr22:20322841-20323200	K562	blood:	n/a	n/a
3	GATA2	chr22:20322341-20322759	K562	blood:	n/a	n/a
4	JUND	chr22:20323283-20323517	HepG2	liver:	n/a	n/a
5	KAP1	chr22:20324242-20324391	K562	blood:	n/a	n/a
6	POU2F2	chr22:20323276-20323400	GM12878	blood:	n/a	n/a
7	SIX5	chr22:20322927-20323123	K562	blood:	n/a	n/a
8	SIX5	chr22:20323248-20323608	K562	blood:	n/a	n/a
9	SPI1	chr22:20323289-20323496	K562	blood:	n/a	n/a
10	SPI1	chr22:20322474-20322723	K562	blood:	n/a	n/a
11	USF1	chr22:20323294-20323424	HepG2	liver:	n/a	n/a
12	ZBTB33	chr22:20323270-20323523	HepG2	liver:	n/a	n/a
13	ZBTB33	chr22:20322335-20322695	K562	blood:	n/a	n/a
14	ZBTB33	chr22:20322923-20323166	K562	blood:	n/a	n/a
15	ZNF274	chr22:20323771-20324433	K562	blood:	n/a	n/a
16	ZNF274	chr22:20324790-20325081	K562	blood:	n/a	n/a

Variant related genes	Relation type
ENSG00000188424	TF binding region

Extended variants
information (count: 193 )
Associated
traits (count: 230 )

Variant overlapped rSNPs/rCNVs (count:193 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs372919768	chr22:20322596-20322597	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
2	rs9605104	chr22:20322597-20322598	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
3	rs373983733	chr22:20322661-20322662	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
4	rs200948544	chr22:20322683-20322684	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
5	rs201951724	chr22:20322687-20322688	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
6	rs200108917	chr22:20322716-20322717	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
7	rs529051435	chr22:20322728-20322729	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
8	rs548930896	chr22:20322741-20322742	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
9	rs3984597	chr22:20322773-20322774	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs201257556	chr22:20322781-20322782	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs12157511	chr22:20322797-20322798	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs62217984	chr22:20322805-20322806	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs565897617	chr22:20322837-20322838	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs369341018	chr22:20322874-20322875	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
15	rs535965870	chr22:20322875-20322876	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
16	rs570904737	chr22:20322881-20322882	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
17	rs368454934	chr22:20322912-20322913	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
18	rs542649321	chr22:20322917-20322918	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
19	rs58148418	chr22:20322920-20322921	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
20	rs369321832	chr22:20322931-20322932	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
21	rs370675641	chr22:20322932-20322933	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
22	rs12157483	chr22:20322940-20322941	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
23	rs12158341	chr22:20322941-20322942	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
24	rs188959619	chr22:20322944-20322945	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
25	rs12161014	chr22:20322961-20322962	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
26	rs12157507	chr22:20322968-20322969	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
27	rs3962723	chr22:20322997-20322998	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
28	rs372969152	chr22:20323014-20323015	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
29	rs551007477	chr22:20323067-20323068	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
30	rs12158411	chr22:20323083-20323084	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
31	rs536650213	chr22:20323147-20323148	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
32	rs557189253	chr22:20323169-20323170	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
33	rs573996925	chr22:20323187-20323188	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
34	rs377001580	chr22:20323196-20323197	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
35	rs374575212	chr22:20323209-20323210	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs6518604	chr22:20323211-20323212	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
37	rs567876912	chr22:20323239-20323240	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs536827373	chr22:20323250-20323251	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
39	rs553268872	chr22:20323257-20323258	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
40	rs573418019	chr22:20323308-20323309	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
41	rs539125146	chr22:20323316-20323317	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
42	rs371426394	chr22:20323401-20323402	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
43	rs373228292	chr22:20323413-20323414	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
44	rs376183278	chr22:20323466-20323467	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
45	rs559099170	chr22:20323502-20323503	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
46	rs572788271	chr22:20323511-20323512	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
47	rs575669705	chr22:20323529-20323530	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
48	rs544634339	chr22:20323555-20323556	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
49	rs193133344	chr22:20323563-20323564	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
50	rs183016293	chr22:20323564-20323565	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:230)

Disease	PMID	Source
Hodgkin''s lymphoma	18641027	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
Velocardiofacial syndrome	20111667	CNVD
Medulloblastoma	21979893	CNVD
sporadic solitary meningiomas	19589153	CNVD
Myofibroblastic sarcoma	19369631	CNVD
Autism	22102821	CNVD
Autism	22495311	CNVD
Lung cancer	18438408	CNVD
Myelofibrosis	22110671	CNVD
Emanuel syndrome	21549014	CNVD
Digeorge syndrome	22283845	CNVD
Schizophrenia	17504246	CNVD
Digeorge syndrome	18033723	CNVD
22q11 deletion syndrome	17034021	CNVD
22q11 deletion syndrome	22511897	CNVD
22q11 deletion syndrome	16829213	CNVD
Autism	22067053	CNVD
Autism	19218893	CNVD
Biliary cancer	22067053	CNVD
Congenital heart defect	21390462	CNVD
Digeorge syndrome	16617304	CNVD
Emanuel syndrome	18184694	CNVD
Non-syndromic sensorineural hearing loss	18184694	CNVD
Obsessive-compulsive disorder	22067053	CNVD
Psychosis	22067053	CNVD
Schizophrenia	19415332	CNVD
Schizophrenia	20587603	CNVD
Shprintzen syndrome	19443537	CNVD
absent pulmonary valve syndrome	16795129	CNVD
language delay	22067053	CNVD
periventricular nodular heterotopia	20648244	CNVD
renal disease	17924346	CNVD
Schizophrenia	20433910	CNVD
22q11 deletion syndrome	17028864	CNVD
Schizophrenia	16969581	CNVD
Non-syndromic sensorineural hearing loss	17135275	CNVD
velo-cardio-facial syndrome	17135275	CNVD
Digeorge syndrome	18787571	CNVD
Autism	18925931	CNVD
Non-small cell lung cancer	21829676	CNVD
22q11.2 microdeletion syndrome	21547621	CNVD
Congenital heart defect	21308838	CNVD
Digeorge syndrome	16512914	CNVD
Digeorge syndrome	20954168	CNVD
Nuchal translucency	21837766	CNVD
Right aortic arch in the fetus	17066500	CNVD
Shprintzen syndrome	17117043	CNVD
Tetralogy of fallot	17405110	CNVD
Velocardiofacial syndrome	20140301	CNVD
Velocardiofacial syndrome	16512914	CNVD
bone mass and metabolism	20516202	CNVD
choanal atresia	18209138	CNVD
extracardiac malformations	17086578	CNVD
fetal heart defects	21308838	CNVD
parathyroid gland dysfunction	16793949	CNVD
prenatal diagnosis	20453657	CNVD
velopharyngeal insufficiency	19620585	CNVD
Prader-willi syndrome	20942916	CNVD
22q11 deletion syndrome	17653112	CNVD
Chronic myelomonocytic leukemia	16760666	CNVD
Non-syndromic sensorineural hearing loss	16829213	CNVD
Non-syndromic sensorineural hearing loss	16760666	CNVD
Chordoma	21602918	CNVD
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Congenital heart defect	22511896	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Burkitt''s lymphoma	18698080	CNVD
Acute myeloid leukemia	16864856	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	17387387	CNVD
Seminomas	18059402	CNVD
Cancer	16751803	CNVD
Metanephric adenoma	20802469	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Acute lymphoblastic leukemia	19100363	CNVD
Colorectal cancer	19359472	CNVD
Metachromatic leukodystrophy	18421352	CNVD
Basal cell lymphoma	17170743	CNVD
Gastrointestinal stromal cancer	19259404	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Paraganglioma	17535989	CNVD
Pulmonary chondroma	17535989	CNVD
Breast cancer	17142309	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
Breast cancer	21858162	CNVD
small cell lung cancer	20016488	CNVD
Myelodysplastic syndrome	21251322	CNVD
Acute myeloid leukemia	20729466	CNVD
Breast cancer	21509527	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Prostate cancer	18632612	CNVD
Gastric cancer	22591714	CNVD
Autism	22958593	CNVD
Digeorge syndrome	16199537	CNVD
Schizophrenia	22958593	CNVD
Schizophrenia	21285140	CNVD
Schizophrenia	22241247	CNVD
Autism	22241247	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	18628472	CNVD
Glioblastoma multiforme	22286061	CNVD
Ovarian neoplasms	16753589	CNVD
Schizophrenia	21399695	CNVD
22q11.21 microdeletion syndrome	19193630	CNVD
Cat eye syndrome	21549014	CNVD
Digeorge syndrome	21549014	CNVD
22q11.2 microdeletion syndrome	22051516	CNVD
22q11.2 microdeletion syndrome	18483005	CNVD
22q11.2 microdeletion syndrome	19565140	CNVD
22q11.2 microdeletion syndrome	20396437	CNVD
22q11.2 microdeletion syndrome	21390462	CNVD
22q11.2 microdeletion syndrome	21573985	CNVD
Austim spectrum disorder	21302340	CNVD
Autism	20970697	CNVD
Bipolar disorder	19114987	CNVD
Congenital heart defect	21257016	CNVD
Developmental delay	18414209	CNVD
DiGeorge-Velo cardiofacial	19284877	CNVD
Epilepsy	20970697	CNVD
Heart disease	20551144	CNVD
Hughes'' syndrome	16595601	CNVD
Mental retardation	18414209	CNVD
Okamoto syndrome	19046188	CNVD
Primary immunodeficiency	22566803	CNVD
Schizophrenia	20877625	CNVD
Schizophrenia	20553308	CNVD
Schizophrenia	21956041	CNVD
Schizophrenia	20970697	CNVD
Tetralogy of Fallot	22912587	CNVD
Velocardiofacial syndrome	17556857	CNVD
Velocardiofacial syndrome	20206275	CNVD
Velocardiofacial syndrome	20970697	CNVD
delayed speech development	21274400	CNVD
velo-cardio-facial syndrome	16511839	CNVD
velo-cardio-facial syndrome	21763005	CNVD
22q11.2 microdeletion syndrome	18799940	CNVD
Digeorge syndrome	20877625	CNVD
22q11.2 microdeletion syndrome	18923514	CNVD
Congenital heart defect	22185286	CNVD
DiGeorge-Velo cardiofacial	16773131	CNVD
Digeorge syndrome	20186050	CNVD
velo-cardio-facial conotruncal-face syndrome	20186050	CNVD
22q11.2 microdeletion syndrome	22116936	CNVD
Disorders of sex development	22290220	CNVD
22q11.2 duplication syndrome	18923514	CNVD
Autism	22095694	CNVD
Mental retardation	19951919	CNVD
Honadal dysgenesis	21048976	CNVD
Mental retardation	16773131	CNVD
22q11.2 microdeletion syndrome	22395003	CNVD
22q11.2 microdeletion syndrome	18691436	CNVD
22q11.2 microdeletion syndrome	18053182	CNVD
22q11.2 microdeletion syndrome	18324686	CNVD
22q11.2 microdeletion syndrome	20074913	CNVD
Congenital heart defect	20802965	CNVD
Congenital heart defect	21134246	CNVD
DiGeorge syndrome	19040613	CNVD
DiGeorge-Velo cardiofacial	18179902	CNVD
Digeorge syndrome	18172682	CNVD
Digeorge syndrome	22470819	CNVD
Digeorge syndrome	21364285	CNVD
Neuroendocrine carcinoma	22470819	CNVD
Non-syndromic sensorineural hearing loss	20069674	CNVD
Smith-Magenis syndrome	18301319	CNVD
Tetralogy of fallot	19144126	CNVD
Velo-cardio-facial syndrome	21364285	CNVD
Velocardiofacial syndrome	18788013	CNVD
cardiac malformation	20573211	CNVD
cardiac malformation	18172682	CNVD
velo-cardio-facial syndrome	18636631	CNVD
Schizophrenia	21822266	CNVD
synaptic plasticity	21368174	CNVD
Schizophrenia	18043741	CNVD
sporadic birth defects	19047251	CNVD
Autism	19046189	CNVD
DiGeorge-Velo cardiofacial	19047251	CNVD
Hypernasal speech	21968682	CNVD
Mental retardation	17339581	CNVD
diverse phenotype	16760730	CNVD
Mental retardation	20152051	CNVD
Breast cancer	16608533	CNVD
Melanoma	18172304	CNVD
Ovarian cancer	22174824	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Wilms tumour	21544195	CNVD
Acute myeloid leukemia	21251322	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Autism	19521722	CNVD
Digeorge syndrome	19521722	CNVD
Autism	19955444	CNVD
Schizophrenia	19955444	CNVD
Mental retardation	17124404	CNVD
Tourette syndrome	20069037	CNVD
Williams-beuren syndrome	18553513	CNVD
Emphysema	19352772	CNVD
Schizophrenia	17160897	CNVD
Cancer	17160897	CNVD
Neuropsychiatric disorder	20069037	CNVD
DiGeorge-Velo cardiofacial	17597781	CNVD
Digeorge syndrome	17576883	CNVD
Schizophrenia	18806272	CNVD
Schizophrenia	18990708	CNVD
Velocardiofacial syndrome	17576883	CNVD
Schizophrenia	20075378	CNVD
Neurodevelopmental disorder	17015230	CNVD
Cancer	17440070	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Esophageal cancer	21851588	CNVD
22q11.2 deletion syndrome	22563040	CNVD
cardiac septal defect	19239688	CNVD
Disease	21346257	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Urothelial carcinoma	21177765	CNVD
Developmental delay	21147756	CNVD
Pancreatic cancer	17952125	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:20309200-20327000	Weak transcription	Right Atrium	heart

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