Variant report

Variant	esv3421553
Chromosome Location	chr6:76857632-76861930
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 118 )
Associated
traits (count: 99 )

Variant overlapped rSNPs/rCNVs (count:118 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs528976179	chr6:76859816-76859817	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs548351885	chr6:76859837-76859838	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs189446365	chr6:76859859-76859860	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs527976521	chr6:76859869-76859870	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs201983677	chr6:76859888-76859889	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs552547902	chr6:76859890-76859891	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs377510573	chr6:76859892-76859893	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs369765713	chr6:76859905-76859906	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs549856314	chr6:76859928-76859929	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs550222322	chr6:76859930-76859931	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs182001518	chr6:76859935-76859936	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs141242771	chr6:76859946-76859947	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs553927378	chr6:76859992-76859993	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs186493178	chr6:76859993-76859994	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs539621061	chr6:76860002-76860003	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs9360981	chr6:76860041-76860042	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
17	rs575946020	chr6:76860050-76860051	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs529085658	chr6:76860052-76860053	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs542985018	chr6:76860058-76860059	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs370246216	chr6:76860065-76860066	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs188184426	chr6:76860067-76860068	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs557956723	chr6:76860081-76860082	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs74885569	chr6:76860101-76860102	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs148295812	chr6:76860108-76860109	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs566989407	chr6:76860118-76860119	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs565364588	chr6:76860185-76860186	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs540809157	chr6:76860189-76860190	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs180881010	chr6:76860226-76860227	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs527841232	chr6:76860231-76860232	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs546394036	chr6:76860232-76860233	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs564598038	chr6:76860233-76860234	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs532073998	chr6:76860243-76860244	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs550185486	chr6:76860249-76860250	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs559248784	chr6:76860267-76860268	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs186353175	chr6:76860346-76860347	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs529405764	chr6:76860367-76860368	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs547523814	chr6:76860372-76860373	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs566172375	chr6:76860376-76860377	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs191347958	chr6:76860387-76860388	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs557952642	chr6:76860406-76860407	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs576706749	chr6:76860417-76860418	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs569592005	chr6:76860425-76860426	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs536982269	chr6:76860430-76860431	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs181872004	chr6:76860431-76860432	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs200472402	chr6:76860501-76860502	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs573348164	chr6:76860502-76860503	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs570796672	chr6:76860509-76860510	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs150898328	chr6:76860521-76860522	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs538527301	chr6:76860528-76860529	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs552759812	chr6:76860574-76860575	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:99)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Autism	22495311	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Gastric cancer	17908304	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Systemic lupus erythematosus	17503323	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Cancer	21637783	CNVD
Colorectal cancer	16272173	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
Lung cancer	18438408	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Prostate cancer	16573809	CNVD
Breast cancer	16272173	CNVD
small cell lung cancer	20016488	CNVD
Prostate cancer	18632612	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Urothelial carcinoma	18382360	CNVD
Ovarian neoplasms	16753589	CNVD
Hepatocellular carcinoma	16750200	CNVD
Wilms tumour	21544195	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Follicular lymphoma	17699855	CNVD
Breast cancer	17133270	CNVD
Leukemia	18688285	CNVD
Prostate cancer	19242612	CNVD
Developmental delay	21147756	CNVD
Glioma	21046410	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Zellweger syndrome	21572526	CNVD
Follicular lymphoma	20505157	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Lung adenocarcinoma	21935476	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Salivary gland tumor	18059337	CNVD
Lung cancer	16773561	CNVD
Glioblastoma multiforme	22286061	CNVD
Urothelial cell carcinoma	18451213	CNVD
Prostate cancer	16461572	CNVD
Mental retardation	21045960	CNVD
Obesity	21045960	CNVD
learning difficulties	21045960	CNVD
Prostate cancer	17245344	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Cancer	20164920	CNVD
Burkitt''s lymphoma	20823134	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:76859800-76865200	Weak transcription	Pancreas	Pancrea

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