Variant report

Variant	esv3422970
Chromosome Location	chr1:228432129-228433500
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:228426358..228429102-chr1:228433065..228434825,2	MCF-7	breast:
2	chr1:228432015..228434186-chr1:228643994..228645645,2	K562	blood:

Variant related genes	Relation type
ENSG00000181218	chromatin interactions

Extended variants
information (count: 72 )
Associated
traits (count: 93 )

Variant overlapped rSNPs/rCNVs (count:72 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs375094558	chr1:228432169-228432170	ZNF genes & repeats Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
2	rs535917838	chr1:228432176-228432177	ZNF genes & repeats Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
3	rs556312336	chr1:228432193-228432194	ZNF genes & repeats Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
4	rs368607358	chr1:228432199-228432200	ZNF genes & repeats Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
5	rs538817176	chr1:228432206-228432207	ZNF genes & repeats Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
6	rs372105291	chr1:228432207-228432208	ZNF genes & repeats Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
7	rs375434996	chr1:228432257-228432258	ZNF genes & repeats Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
8	rs41305731	chr1:228432264-228432265	ZNF genes & repeats Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
9	rs373192514	chr1:228432270-228432271	ZNF genes & repeats Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
10	rs141020436	chr1:228432315-228432316	ZNF genes & repeats Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
11	rs12077365	chr1:228432323-228432324	ZNF genes & repeats Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
12	rs554621007	chr1:228432427-228432428	ZNF genes & repeats Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
13	rs574785943	chr1:228432460-228432461	ZNF genes & repeats Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
14	rs543517051	chr1:228432543-228432544	ZNF genes & repeats Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
15	rs563463248	chr1:228432636-228432637	ZNF genes & repeats Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
16	rs201997312	chr1:228432637-228432638	ZNF genes & repeats Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
17	rs184408277	chr1:228432659-228432660	ZNF genes & repeats Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
18	rs571749969	chr1:228432666-228432667	ZNF genes & repeats Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
19	rs552078236	chr1:228432680-228432681	ZNF genes & repeats Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
20	rs565592507	chr1:228432681-228432682	ZNF genes & repeats Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
21	rs187471666	chr1:228432740-228432741	ZNF genes & repeats Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
22	rs192971103	chr1:228432748-228432749	ZNF genes & repeats Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
23	rs548864823	chr1:228432759-228432760	ZNF genes & repeats Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
24	rs184752232	chr1:228432763-228432764	ZNF genes & repeats Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
25	rs529717109	chr1:228432767-228432768	ZNF genes & repeats Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
26	rs534517921	chr1:228432780-228432781	ZNF genes & repeats Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
27	rs558007639	chr1:228432789-228432790	ZNF genes & repeats Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
28	rs549832931	chr1:228432801-228432802	ZNF genes & repeats Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
29	rs1757130	chr1:228432860-228432861	ZNF genes & repeats Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
30	rs538781807	chr1:228432873-228432874	ZNF genes & repeats Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
31	rs79532410	chr1:228432924-228432925	ZNF genes & repeats Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
32	rs374952384	chr1:228432954-228432955	ZNF genes & repeats Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
33	rs552399107	chr1:228432964-228432965	ZNF genes & repeats Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
34	rs1757129	chr1:228432987-228432988	ZNF genes & repeats Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
35	rs534573773	chr1:228433076-228433077	ZNF genes & repeats Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
36	rs369379659	chr1:228433109-228433110	ZNF genes & repeats Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
37	rs377330123	chr1:228433119-228433120	ZNF genes & repeats Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
38	rs370301026	chr1:228433126-228433127	ZNF genes & repeats Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
39	rs374358405	chr1:228433127-228433128	ZNF genes & repeats Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
40	rs377738173	chr1:228433132-228433133	ZNF genes & repeats Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
41	rs189620214	chr1:228433171-228433172	ZNF genes & repeats Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
42	rs537026087	chr1:228433172-228433173	ZNF genes & repeats Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
43	rs374351944	chr1:228433202-228433203	ZNF genes & repeats Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
44	rs200344109	chr1:228433209-228433210	ZNF genes & repeats Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
45	rs180718201	chr1:228433216-228433217	ZNF genes & repeats Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
46	rs2487384	chr1:228433217-228433218	ZNF genes & repeats Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
47	rs374798759	chr1:228433220-228433221	ZNF genes & repeats Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
48	rs545938369	chr1:228433225-228433226	ZNF genes & repeats Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
49	rs559471690	chr1:228433238-228433239	ZNF genes & repeats Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
50	rs367554644	chr1:228433269-228433270	ZNF genes & repeats Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:93)

Disease	PMID	Source
Esophageal squamous carcinoma	21637470	CNVD
HIV/AIDS	22032296	CNVD
Schizophrenia	19415332	CNVD
Autism	22495311	CNVD
Melanoma	18172304	CNVD
Rett syndrome	21593744	CNVD
Medulloblastoma	21979893	CNVD
Cancer	20164919	CNVD
Wilms tumour	21544195	CNVD
Breast cancer	17133270	CNVD
Non-small cell lung cancer	21044232	CNVD
Cervical cancer	21063398	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	20632083	CNVD
Endometrial cancer	22040021	CNVD
Ewing''s sarcoma	21437220	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	21080181	CNVD
Hepatocellular carcinoma	22174799	CNVD
Medulloblastoma	21292688	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	21264507	CNVD
Liposarcoma	21253554	CNVD
Multiple myeloma	21628407	CNVD
Cancer	16751803	CNVD
Prostate cancer	16705090	CNVD
Neuroblastoma	19435921	CNVD
Breast cancer	17850661	CNVD
Breast cancer	16461572	CNVD
Intracranial tumor	16823260	CNVD
Medulloblastoma	18056178	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Colorectal cancer	16272173	CNVD
Breast cancer	17603634	CNVD
Neuroblastoma	21899760	CNVD
Breast cancer	21858162	CNVD
Non-small cell lung cancer	21385341	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Breast cancer	16608533	CNVD
Ewing''s sarcoma	22429812	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	17001317	CNVD
Acute myeloid leukemia	21251322	CNVD
Multiple myeloma	17550852	CNVD
Prostate cancer	18632612	CNVD
Acute myeloid leukemia	20729466	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Testicular germ cell tumor	18059402	CNVD
Ependymoma	18628472	CNVD
Leukemia	18628472	CNVD
Neuroblastoma	18923191	CNVD
Acute lymphoblastic leukemia	19100363	CNVD
Breast cancer	21509527	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Urothelial carcinoma	21177765	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Chordoma	18071362	CNVD
T-cell lymphomas	19863542	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hepatocellular carcinoma	18803288	CNVD
Urothelial tumor	18831757	CNVD
Lung cancer	18438408	CNVD
Medulloblastoma	16783165	CNVD
Basal cell lymphoma	17170743	CNVD
Mental retardation	19951919	CNVD
Non-syndromic sensorineural hearing loss	17873649	CNVD
Basal cell lymphoma	17053054	CNVD
Autism	14699429	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Fumarase deficiency	21572526	CNVD
Autism	17483303	CNVD
Kartagener syndrome	16639409	CNVD
Congenital abnormalities	21549014	CNVD
Developmental delay	21549014	CNVD
Mental retardation	21549014	CNVD
small cell lung cancer	20016488	CNVD
Glioblastoma multiforme	21138945	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Cancer	20164920	CNVD
Cancer	17060936	CNVD
Myelofibrosis	22110671	CNVD
abnormal development	18461090	CNVD
Breast cancer	21364760	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD
Lung adenocarcinoma	21935476	CNVD
Melanoma	17363583	CNVD

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:228417200-228433000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr1:228418400-228436000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr1:228422200-228434800	ZNF genes & repeats	Dnd41	blood
4	chr1:228425800-228434200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr1:228426000-228435200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
6	chr1:228426600-228434400	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr1:228427000-228435600	ZNF genes & repeats	Brain Germinal Matrix	brain
8	chr1:228427200-228434600	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr1:228428000-228432200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
10	chr1:228428000-228433400	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
11	chr1:228428200-228433200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
12	chr1:228428200-228434200	ZNF genes & repeats	Fetal Lung	lung
13	chr1:228428200-228434600	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr1:228428200-228435000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
15	chr1:228428400-228434000	ZNF genes & repeats	Duodenum Mucosa	Duodenum
16	chr1:228428400-228434400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
17	chr1:228428400-228434600	ZNF genes & repeats	Liver	Liver
18	chr1:228428400-228434600	ZNF genes & repeats	Fetal Intestine Large	intestine
19	chr1:228428400-228435200	ZNF genes & repeats	Primary T cells from cord blood	blood
20	chr1:228428400-228436600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
21	chr1:228428600-228433600	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr1:228428600-228434400	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
23	chr1:228428600-228434600	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
24	chr1:228428600-228434800	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
25	chr1:228428600-228435000	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
26	chr1:228428600-228435000	ZNF genes & repeats	Fetal Muscle Leg	muscle
27	chr1:228428800-228434800	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
28	chr1:228429000-228434800	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
29	chr1:228429000-228439400	Strong transcription	HSMMtube	muscle
30	chr1:228429800-228432200	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
31	chr1:228430000-228435200	ZNF genes & repeats	Fetal Kidney	kidney
32	chr1:228430200-228433800	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
33	chr1:228430200-228434000	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
34	chr1:228430200-228434600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
35	chr1:228430200-228435000	ZNF genes & repeats	Primary mononuclear cells fromperipheralblood	Blood
36	chr1:228430400-228432200	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--
37	chr1:228430400-228432400	Weak transcription	Fetal Heart	heart
38	chr1:228430400-228433200	Strong transcription	Placenta Amnion	Placenta Amnion
39	chr1:228430400-228433400	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
40	chr1:228430400-228434400	ZNF genes & repeats	Fetal Muscle Trunk	muscle
41	chr1:228430400-228434600	ZNF genes & repeats	Spleen	Spleen
42	chr1:228430400-228434800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
43	chr1:228430400-228434800	ZNF genes & repeats	Fetal Stomach	stomach
44	chr1:228430400-228435000	ZNF genes & repeats	A549	lung
45	chr1:228430400-228435200	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr1:228430400-228435200	ZNF genes & repeats	Thymus	Thymus
47	chr1:228430400-228435800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr1:228430400-228436600	ZNF genes & repeats	Fetal Intestine Small	intestine
49	chr1:228430600-228433400	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
50	chr1:228430600-228433400	ZNF genes & repeats	Aorta	Aorta

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