Variant report

Variant	esv3423073
Chromosome Location	chr19:56088190-56091888
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	BCL3	chr19:56091329-56093788	A549	lung:	n/a	chr19:56093661-56093670 chr19:56092350-56092359
2	CEBPD	chr19:56091685-56092539	HepG2	liver:	n/a	n/a
3	CHD1	chr19:56091005-56092989	IMR90	lung:	n/a	n/a
4	CHD2	chr19:56091709-56092573	HepG2	liver:	n/a	n/a
5	CHD2	chr19:56091654-56092675	GM12878	blood:	n/a	n/a
6	CHD2	chr19:56091658-56092660	Hela-S3	cervix:	n/a	n/a
7	CTCF	chr19:56091520-56091670	HCPEpiC	choroid plexus:	n/a	n/a
8	EGR1	chr19:56090301-56091039	H1-hESC	embryonic stem cell:	n/a	n/a
9	EGR1	chr19:56090775-56091032	K562	blood:	n/a	n/a
10	EGR1	chr19:56090807-56091119	K562	blood:	n/a	n/a
11	ELF1	chr19:56091418-56091848	K562	blood:	n/a	chr19:56091645-56091658
12	ELF1	chr19:56091440-56091844	GM12878	blood:	n/a	chr19:56091645-56091658
13	ELF1	chr19:56091462-56091652	K562	blood:	n/a	n/a
14	ELK1	chr19:56091666-56091731	Hela-S3	cervix:	n/a	n/a
15	FOSL1	chr19:56090782-56091051	K562	blood:	n/a	n/a
16	FOSL1	chr19:56090745-56091127	H1-hESC	embryonic stem cell:	n/a	n/a
17	FOSL1	chr19:56090777-56091044	K562	blood:	n/a	n/a
18	GABPA	chr19:56091861-56093159	K562	blood:	n/a	n/a
19	GABPA	chr19:56091874-56093133	MCF-7	breast:	n/a	n/a
20	GABPA	chr19:56091429-56091877	A549	lung:	n/a	n/a
21	HCFC1	chr19:56091256-56093043	Hela-S3	cervix:	n/a	n/a
22	JUN	chr19:56091579-56093054	K562	blood:	n/a	chr19:56091907-56091916
23	MAX	chr19:56091864-56093737	A549	lung:	n/a	chr19:56092224-56092234 chr19:56092600-56092610 chr19:56091909-56091919 chr19:56092361-56092371
24	MAX	chr19:56091376-56093828	A549	lung:	n/a	chr19:56092224-56092234 chr19:56091562-56091572 chr19:56092600-56092610 chr19:56091909-56091919 chr19:56092361-56092371
25	MAZ	chr19:56091495-56093286	HepG2	liver:	n/a	chr19:56092224-56092234 chr19:56091562-56091572 chr19:56092600-56092610 chr19:56091909-56091919 chr19:56092361-56092371
26	MAZ	chr19:56091119-56093072	IMR90	lung:	n/a	chr19:56092224-56092234 chr19:56091562-56091572 chr19:56092600-56092610 chr19:56091909-56091919 chr19:56092361-56092371
27	MAZ	chr19:56091445-56091699	Hela-S3	cervix:	n/a	chr19:56091562-56091572
28	MAZ	chr19:56091251-56092828	GM12878	blood:	n/a	chr19:56092224-56092234 chr19:56091562-56091572 chr19:56092600-56092610 chr19:56091909-56091919 chr19:56092361-56092371
29	MAZ	chr19:56091415-56093026	K562	blood:	n/a	chr19:56092224-56092234 chr19:56091562-56091572 chr19:56092600-56092610 chr19:56091909-56091919 chr19:56092361-56092371
30	MTA3	chr19:56091532-56091862	GM12878	blood:	n/a	n/a
31	MXI1	chr19:56091163-56093260	SK-N-SH	brain:	n/a	n/a
32	MYC	chr19:56091533-56091770	K562	blood:	n/a	chr19:56091562-56091572
33	NR3C1	chr19:56091675-56092654	A549	lung:	n/a	chr19:56092421-56092434
34	PBX3	chr19:56091790-56092669	A549	lung:	n/a	n/a
35	POLR2A	chr19:56091691-56091782	H1-hESC	embryonic stem cell:	n/a	n/a
36	POLR2A	chr19:56089323-56089457	HepG2	liver:	n/a	n/a
37	POLR2A	chr19:56088224-56088360	MCF10A-Er-Src	breast:	n/a	n/a
38	POLR2A	chr19:56088683-56088695	HepG2	liver:	n/a	n/a
39	POLR2A	chr19:56091262-56091852	PANC-1	pancreas:	n/a	n/a
40	POLR2A	chr19:56089868-56091088	A549	lung:	n/a	n/a
41	POLR2A	chr19:56090053-56090152	A549	lung:	n/a	n/a
42	POLR2A	chr19:56089467-56089479	HepG2	liver:	n/a	n/a
43	POLR2A	chr19:56087495-56088727	MCF10A-Er-Src	breast:	n/a	n/a
44	POLR2A	chr19:56091451-56091670	Gliobla	brain:	n/a	n/a
45	POLR2A	chr19:56090422-56090536	A549	lung:	n/a	n/a
46	POLR2A	chr19:56088214-56088621	GM12878	blood:	n/a	n/a
47	POLR2A	chr19:56091887-56092678	GM12878	blood:	n/a	n/a
48	POLR2A	chr19:56091707-56092814	MCF10A-Er-Src	breast:	n/a	n/a
49	POLR2A	chr19:56091533-56091878	HepG2	liver:	n/a	n/a
50	POLR2A	chr19:56089472-56089851	A549	lung:	n/a	n/a

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr19:56089012-56089062	IMR90	lung:	fetal
2	chr19:56089807-56089857	RPTEC	kidney:	n/a
3	chr19:56089012-56089062	Caco-2	colon:	n/a
4	chr19:56089807-56089857	GM19239	blood:	n/a
5	chr19:56090686-56090736	ovcar-3	ovarian:	n/a
6	chr19:56090781-56090831	HCPEpiC	choroid plexus:	n/a
7	chr19:56090200-56090250	ECC-1	luminal epithelium:	n/a
8	chr19:56090200-56090250	Hela-S3	cervix:	n/a
9	chr19:56090781-56090831	IMR90	lung:	fetal
10	chr19:56089012-56089062	AG09309	skin:	n/a
11	chr19:56089493-56089543	LNCaP	prostate:	n/a
12	chr19:56090781-56090831	HRPEpiC	eye:	n/a
13	chr19:56090781-56090831	AG04450	lung:	fetal
14	chr19:56089493-56089543	ProgFib	skin:	n/a
15	chr19:56089275-56089325	U87	brain:	n/a
16	chr19:56089406-56089456	IMR90	lung:	fetal
17	chr19:56090686-56090736	RPTEC	kidney:	n/a
18	chr19:56090686-56090736	HRPEpiC	eye:	n/a
19	chr19:56089807-56089857	Jurkat	blood:	n/a
20	chr19:56090200-56090250	HEEpiC	esophagus:	n/a
21	chr19:56090200-56090250	SK-N-SH	brain:	n/a
22	chr19:56090200-56090250	Jurkat	blood:	n/a
23	chr19:56089493-56089543	NT2-D1	testis:	n/a
24	chr19:56090781-56090831	HRCEpiC	kidney:	n/a
25	chr19:56089493-56089543	SAEC	small airway:	n/a
26	chr19:56089807-56089857	U87	brain:	n/a
27	chr19:56090200-56090250	CMK	blood:	n/a
28	chr19:56090781-56090831	ProgFib	skin:	n/a
29	chr19:56089275-56089325	HCM	heart:	n/a
30	chr19:56089012-56089062	HL-60	blood:	n/a
31	chr19:56089012-56089062	AG09319	gingival:	n/a
32	chr19:56089807-56089857	HMEC	breast:	n/a
33	chr19:56089012-56089062	HRE	kidney:	n/a
34	chr19:56090781-56090831	MCF10A-Er-Src	breast:	n/a
35	chr19:56090686-56090736	U87	brain:	n/a
36	chr19:56089406-56089456	SK-N-MC	brain:	n/a
37	chr19:56089012-56089062	CMK	blood:	n/a
38	chr19:56089807-56089857	CMK	blood:	n/a
39	chr19:56090686-56090736	A549	lung:	n/a
40	chr19:56089807-56089857	HPAEpiC	pulmonary alveolar:	n/a
41	chr19:56090686-56090736	NH-A	brain:	n/a
42	chr19:56090200-56090250	HCPEpiC	choroid plexus:	n/a
43	chr19:56089275-56089325	Hepatocyte	liver:	n/a
44	chr19:56090686-56090736	Hepatocyte	liver:	n/a
45	chr19:56090686-56090736	HCPEpiC	choroid plexus:	n/a
46	chr19:56089406-56089456	PrEC	prostate:	n/a
47	chr19:56089807-56089857	IMR90	lung:	fetal
48	chr19:56089012-56089062	SK-N-MC	brain:	n/a
49	chr19:56089493-56089543	AG10803	skin:	n/a
50	chr19:56090686-56090736	NT2-D1	testis:	n/a

No.	Distal block	Cell Line	Cell type
1	chr19:56085801..56089181-chr19:56090146..56094195,5	MCF-7	breast:
2	chr19:56091409..56094452-chr19:56108819..56113428,6	K562	blood:
3	chr19:56089635..56093860-chr19:56114549..56117863,7	MCF-7	breast:
4	chr19:56085801..56089181-chr19:56090146..56094195,5	MCF-7	breast:
5	chr19:55916968..55919550-chr19:56086420..56090390,4	K562	blood:
6	chr19:56076616..56078313-chr19:56088787..56090501,2	K562	blood:
7	chr19:56087478..56090277-chr19:56092054..56093869,2	MCF-7	breast:
8	chr19:56087311..56094258-chr19:56108819..56113699,11	K562	blood:
9	chr19:55916968..55919340-chr19:56087208..56090390,3	K562	blood:
10	chr19:56087628..56093963-chr19:56108517..56113906,9	MCF-7	breast:
11	chr19:56086664..56089219-chr19:56150784..56152646,2	MCF-7	breast:
12	chr19:55973159..55975306-chr19:56090568..56094014,3	K562	blood:
13	chr19:56089123..56090949-chr2:85134145..85135899,2	MCF-7	breast:
14	chr18:20513279..20513897-chr19:56091558..56092532,2	NB4	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF579-1	chr19:56088136-56088780	ENSG00000267730.1

Variant related genes	Relation type
ENSG00000267730	TF binding region
ENSG00000267730	CpG island
ENSG00000171425	chromatin interactions
ENSG00000063241	chromatin interactions
ENSG00000264817	chromatin interactions
ENSG00000173581	chromatin interactions
ENSG00000218891	chromatin interactions
ENSG00000213015	chromatin interactions
ENSG00000171443	chromatin interactions
ENSG00000265943	chromatin interactions
ENSG00000108106	chromatin interactions
ENSG00000267730	chromatin interactions
ENSG00000261221	chromatin interactions
ENSG00000101773	chromatin interactions
ENSG00000179943	chromatin interactions

Extended variants
information (count: 147 )
Associated
traits (count: 70 )

Variant overlapped rSNPs/rCNVs (count:147 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs187679205	chr19:56088218-56088219	Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	7 gene(s)	Overlapped CNVs	n/a
2	rs529690427	chr19:56088236-56088237	Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	7 gene(s)	Overlapped CNVs	n/a
3	rs149225651	chr19:56088261-56088262	Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	7 gene(s)	Overlapped CNVs	n/a
4	rs571528565	chr19:56088400-56088401	Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	7 gene(s)	Overlapped CNVs	n/a
5	rs142593315	chr19:56088421-56088422	Strong transcription Weak transcription	Chromatin interactive region lncRNA	7 gene(s)	Overlapped CNVs	n/a
6	rs143391043	chr19:56088466-56088467	Strong transcription Weak transcription	Chromatin interactive region lncRNA	7 gene(s)	Overlapped CNVs	n/a
7	rs79241306	chr19:56088478-56088479	Strong transcription Weak transcription	Chromatin interactive region lncRNA	7 gene(s)	Overlapped CNVs	n/a
8	rs12972695	chr19:56088487-56088488	Strong transcription Weak transcription	Chromatin interactive region lncRNA	7 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
9	rs567958580	chr19:56088494-56088495	Strong transcription Weak transcription	Chromatin interactive region lncRNA	7 gene(s)	Overlapped CNVs	n/a
10	rs76620330	chr19:56088508-56088509	Strong transcription Weak transcription	Chromatin interactive region lncRNA	7 gene(s)	Overlapped CNVs	n/a
11	rs80306853	chr19:56088509-56088510	Strong transcription Weak transcription	Chromatin interactive region lncRNA	7 gene(s)	Overlapped CNVs	n/a
12	rs62127841	chr19:56088511-56088512	Strong transcription Weak transcription	Chromatin interactive region lncRNA	7 gene(s)	Overlapped CNVs	n/a
13	rs536648757	chr19:56088533-56088534	Strong transcription Weak transcription	Chromatin interactive region lncRNA	7 gene(s)	Overlapped CNVs	n/a
14	rs77659309	chr19:56088538-56088539	Strong transcription Weak transcription	Chromatin interactive region lncRNA	7 gene(s)	Overlapped CNVs	n/a
15	rs371758009	chr19:56088560-56088561	Strong transcription Weak transcription	Chromatin interactive region lncRNA	7 gene(s)	Overlapped CNVs	n/a
16	rs539154060	chr19:56088579-56088580	Strong transcription Weak transcription	Chromatin interactive region lncRNA	7 gene(s)	Overlapped CNVs	n/a
17	rs77282471	chr19:56088619-56088620	Strong transcription Weak transcription	Chromatin interactive region lncRNA	7 gene(s)	Overlapped CNVs	n/a
18	rs534959342	chr19:56088636-56088637	Strong transcription Weak transcription	Chromatin interactive region lncRNA	7 gene(s)	Overlapped CNVs	n/a
19	rs577888168	chr19:56088650-56088651	Strong transcription Weak transcription	Chromatin interactive region lncRNA	7 gene(s)	Overlapped CNVs	n/a
20	rs547192912	chr19:56088672-56088673	Strong transcription Weak transcription	Chromatin interactive region lncRNA	7 gene(s)	Overlapped CNVs	n/a
21	rs193086394	chr19:56088684-56088685	Strong transcription Weak transcription	Chromatin interactive region lncRNA	7 gene(s)	Overlapped CNVs	n/a
22	rs183899158	chr19:56088697-56088698	Strong transcription Weak transcription	Chromatin interactive region lncRNA	7 gene(s)	Overlapped CNVs	n/a
23	rs573898270	chr19:56088705-56088706	Strong transcription Weak transcription	Chromatin interactive region lncRNA	7 gene(s)	Overlapped CNVs	n/a
24	rs542561918	chr19:56088725-56088726	Strong transcription Weak transcription	Chromatin interactive region lncRNA	7 gene(s)	Overlapped CNVs	n/a
25	rs559095646	chr19:56088734-56088735	Strong transcription Weak transcription	Chromatin interactive region lncRNA	7 gene(s)	Overlapped CNVs	n/a
26	rs59859551	chr19:56088738-56088739	Strong transcription Weak transcription	Chromatin interactive region lncRNA	7 gene(s)	Overlapped CNVs	n/a
27	rs551039612	chr19:56088920-56088921	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
28	rs564674216	chr19:56088946-56088947	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
29	rs531000608	chr19:56088957-56088958	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
30	rs550810469	chr19:56088968-56088969	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
31	rs567903884	chr19:56089015-56089016	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
32	rs536556006	chr19:56089072-56089073	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
33	rs114967586	chr19:56089171-56089172	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
34	rs1053817	chr19:56089219-56089220	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	8 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
35	rs59026892	chr19:56089235-56089236	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
36	rs57846854	chr19:56089238-56089239	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
37	rs188794000	chr19:56089275-56089276	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	CpG island Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
38	rs372800344	chr19:56089297-56089298	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	CpG island Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
39	rs559077167	chr19:56089302-56089303	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	CpG island Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
40	rs377230490	chr19:56089311-56089312	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	CpG island Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
41	rs575846445	chr19:56089313-56089314	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	CpG island Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
42	rs537238346	chr19:56089325-56089326	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
43	rs368966691	chr19:56089333-56089334	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
44	rs148396831	chr19:56089339-56089340	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
45	rs556879939	chr19:56089343-56089344	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
46	rs2292812	chr19:56089353-56089354	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	5 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
47	rs147579300	chr19:56089389-56089390	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
48	rs192618440	chr19:56089418-56089419	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
49	rs139081832	chr19:56089419-56089420	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
50	rs141760060	chr19:56089420-56089421	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:70)

Disease	PMID	Source
Myelodysplastic syndrome	17634407	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Retinoblastoma	21504564	CNVD
Medulloblastoma	21979893	CNVD
Ovarian cancer	21720365	CNVD
Cancer	20164919	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Prostate cancer	18632612	CNVD
Ductal carcinoma	22052326	CNVD
Congenital nephrotic syndrome	18421352	CNVD
Astrocytoma	17934521	CNVD
Leukemia	17361228	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Breast cancer	17603634	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Oligodendroglial tumors	17285580	CNVD
renal disease	20603712	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Salivary gland adenoid cystic carcinoma	17545515	CNVD
Breast cancer	16608533	CNVD
Neuroblastoma	18923191	CNVD
Chordoma	18071362	CNVD
Urothelial carcinoma	21177765	CNVD
Metanephric adenoma	20802469	CNVD
Acute myeloid leukemia	16864856	CNVD
Bladder cancer	21909424	CNVD
Medulloblastoma	16783165	CNVD
Acute myeloid leukemia	20729466	CNVD
Ovarian cancer	22174824	CNVD
Multiple myeloma	16616336	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Wilms tumour	21544195	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Congenital anomalies of the kidney and urinary tract	18852474	CNVD
Glioblastoma multiforme	17002787	CNVD
Cervical cancer	21062161	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Prostate cancer	16573809	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Lung cancer	18438408	CNVD
Colorectal cancer	16272173	CNVD
Ovarian cancer	21781307	CNVD
Neuroblastoma	20406844	CNVD
Breast cancer	21785460	CNVD
Breast cancer	20459607	CNVD
Esophageal squamous carcinoma	18405350	CNVD
Lung adenocarcinoma	17086460	CNVD
Lung cancer	17086460	CNVD
Basal cell lymphoma	19029149	CNVD
Diffuse large b-cell lymphoma	19029149	CNVD
Myelofibrosis	22110671	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
Alzheimer''s disease	22166940	CNVD
Heart disease	21282601	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Glioblastoma multiforme	21922591	CNVD
Non-syndromic sensorineural hearing loss	18496225	CNVD
Breast cancer	21509527	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:512 , 50 per page) page: 1 2 3 4 5 6 7 ... 11

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:56067400-56088400	Weak transcription	Gastric	stomach
2	chr19:56075800-56090400	Weak transcription	Psoas Muscle	Psoas
3	chr19:56076000-56088200	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr19:56076000-56088200	Weak transcription	Left Ventricle	heart
5	chr19:56076000-56088400	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr19:56076000-56091000	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr19:56076000-56091000	Weak transcription	Right Atrium	heart
8	chr19:56076400-56088200	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr19:56076400-56088600	Weak transcription	Colonic Mucosa	Colon
10	chr19:56076600-56091000	Weak transcription	Fetal Heart	heart
11	chr19:56078600-56091000	Weak transcription	Fetal Kidney	kidney
12	chr19:56081000-56088200	Weak transcription	NHLF	lung
13	chr19:56081200-56088800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr19:56081800-56091000	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr19:56082200-56088800	Weak transcription	Pancreas	Pancrea
16	chr19:56082400-56088200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr19:56083800-56088400	Weak transcription	Spleen	Spleen
18	chr19:56083800-56091000	Weak transcription	HepG2	liver
19	chr19:56084200-56088200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr19:56084200-56091000	Weak transcription	K562	blood
21	chr19:56084400-56088200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr19:56084400-56088400	Weak transcription	Right Ventricle	heart
23	chr19:56085000-56088200	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr19:56085200-56088200	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr19:56085200-56088400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr19:56085200-56090000	Weak transcription	Fetal Lung	lung
27	chr19:56085400-56088200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr19:56085600-56088200	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr19:56085600-56088800	Weak transcription	Brain Hippocampus Middle	brain
30	chr19:56085800-56088200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr19:56085800-56088200	Weak transcription	NHEK	skin
32	chr19:56086000-56088200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr19:56086000-56088200	Weak transcription	Adipose Nuclei	Adipose
34	chr19:56086000-56088400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr19:56086000-56090000	Weak transcription	Stomach Smooth Muscle	stomach
36	chr19:56086000-56091000	Weak transcription	NH-A	brain
37	chr19:56086200-56088200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr19:56086200-56088200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr19:56086200-56088200	Weak transcription	HUES48 Cell Line	embryonic stem cell
40	chr19:56086200-56088200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr19:56086200-56088200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr19:56086200-56088200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
43	chr19:56086200-56088200	Weak transcription	Lung	lung
44	chr19:56086200-56088400	Weak transcription	Primary T helper cells fromperipheralblood	blood
45	chr19:56086200-56088400	Weak transcription	Thymus	Thymus
46	chr19:56086200-56088800	Weak transcription	Small Intestine	intestine
47	chr19:56086200-56091000	Weak transcription	Rectal Smooth Muscle	rectum
48	chr19:56086200-56091200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr19:56086400-56088200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
50	chr19:56086400-56088200	Weak transcription	iPS-18 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links