Variant report

Variant	esv3423608
Chromosome Location	chr7:4196915-4197096
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:4195210..4197944-chr7:4502921..4505536,2	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 81 )

Variant overlapped rSNPs/rCNVs (count:28 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs374948369	chr7:4196925-4196926	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs139782313	chr7:4196940-4196941	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs73035590	chr7:4196951-4196952	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs9297129	chr7:4196968-4196969	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs202119924	chr7:4196972-4196973	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs386709541	chr7:4196974-4196975	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs370682078	chr7:4196975-4196976	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs9297131	chr7:4196976-4196977	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs13312136	chr7:4196978-4196979	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs111853434	chr7:4196979-4196980	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs370368613	chr7:4196988-4196989	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs9297132	chr7:4196990-4196991	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs9297133	chr7:4196991-4196992	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs13231879	chr7:4196998-4196999	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs373784190	chr7:4197005-4197006	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs9297134	chr7:4197006-4197007	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs367664479	chr7:4197007-4197008	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs371590896	chr7:4197011-4197012	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs191124828	chr7:4197014-4197015	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs13312187	chr7:4197046-4197047	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs568282435	chr7:4197059-4197060	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs370903120	chr7:4197060-4197061	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs531033296	chr7:4197063-4197064	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs116980343	chr7:4197067-4197068	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs571866662	chr7:4197070-4197071	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs113367098	chr7:4197080-4197081	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs28727581	chr7:4197083-4197084	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs200220368	chr7:4197092-4197093	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:81)

Disease	PMID	Source
Malignant mesothelioma	18160781	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Chordoma	21602918	CNVD
Lynch syndrome	22585707	CNVD
Follicular lymphoma	20505157	CNVD
Breast cancer	16397240	CNVD
Raine Syndrome	17924334	CNVD
Diffuse large b-cell lymphoma	21266526	CNVD
Melanoma	18172304	CNVD
Sudden cardiac death	19188705	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Prostate cancer	16573809	CNVD
Glioma	18556773	CNVD
Ovarian cancer	21720365	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Ovarian cancer	22174824	CNVD
Urothelial carcinoma	18382360	CNVD
Medulloblastoma	21979893	CNVD
Lynch syndrome	18415027	CNVD
Biliary cancer	19435499	CNVD
Cancer	16751803	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Wilms tumour	21544195	CNVD
Glioblastoma multiforme	17387387	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Neuroblastoma	18923191	CNVD
Glioma	21971842	CNVD
Glioblastoma multiforme	21080181	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Oral cancer	21386901	CNVD
colon cancer	17210682	CNVD
Lung adenocarcinoma	21810691	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Colorectal cancer	19359472	CNVD
Hypothalamic hamartomas	18252217	CNVD
Human rectal carcinomas	16397240	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Medulloblastoma	18056178	CNVD
Basal cell lymphoma	17170743	CNVD
Ewing''s sarcoma	21437220	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Stenocardia	21860640	CNVD
Vasospasm	21860640	CNVD
Developmental delay	21147756	CNVD
Prostate cancer	18632612	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Thoracic aortic aneurysm	21092924	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Ewing''s sarcoma	17952124	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21364760	CNVD
Autism	22495311	CNVD
Lung cancer	18438408	CNVD
small cell lung cancer	20016488	CNVD
Leukemia	23979775	CNVD
Spondylocostal dysostosis	21085971	CNVD
Mental retardation	17901693	CNVD
Heart disease	21282601	CNVD
Glioblastoma multiforme	22286061	CNVD
lymphocytic leukemia	21291569	CNVD
Basal cell lymphoma	17053054	CNVD
Cancer	20164920	CNVD
Colorectal cancer	21645411	CNVD
Intellectual disability	21811512	CNVD
Breast cancer	22522925	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Urothelial carcinoma	21177765	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:4169200-4228200	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr7:4184800-4198800	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr7:4185000-4227800	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr7:4185400-4198600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr7:4185600-4198800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr7:4188200-4198600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr7:4188200-4211200	Weak transcription	Brain Germinal Matrix	brain
8	chr7:4189200-4217000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr7:4189600-4228400	Weak transcription	Fetal Brain Female	brain
10	chr7:4189800-4198400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr7:4190200-4197800	Weak transcription	Spleen	Spleen
12	chr7:4191400-4215200	Weak transcription	Aorta	Aorta
13	chr7:4191800-4198000	Weak transcription	Fetal Stomach	stomach
14	chr7:4192000-4197400	Weak transcription	Fetal Muscle Leg	muscle
15	chr7:4192000-4198000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr7:4192200-4200600	Weak transcription	Colon Smooth Muscle	Colon
17	chr7:4195200-4197000	Enhancers	HepG2	liver
18	chr7:4195800-4197400	Enhancers	Fetal Muscle Trunk	muscle
19	chr7:4195800-4203000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr7:4196200-4197000	Weak transcription	Pancreas	Pancrea
21	chr7:4196200-4197400	Weak transcription	Fetal Intestine Small	intestine
22	chr7:4196400-4216000	Weak transcription	Fetal Lung	lung
23	chr7:4196400-4219600	Weak transcription	Fetal Intestine Large	intestine
24	chr7:4196800-4197000	Enhancers	Adipose Nuclei	Adipose
25	chr7:4197000-4197200	Enhancers	Pancreas	Pancrea
26	chr7:4197000-4197400	Weak transcription	Adipose Nuclei	Adipose

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links