Variant report
| Variant | esv3424308 |
|---|---|
| Chromosome Location | chr10:39019196-39021694 |
| allele | n/a |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:2)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:2 , 50 per page) page:
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| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-SEPT7L-2 | chr10:39019400-39019542 | NONHSAT012836 |
| 2 | lnc-SEPT7L-2 | chr10:39019400-39019542 | NONHSAT012838 |
| No data |
| No data |
| No data |
Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | rs560083072 | chr10:39019466-39019467 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 2 | rs200013808 | chr10:39019467-39019468 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 3 | rs529271857 | chr10:39019471-39019472 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 4 | rs71500453 | chr10:39019486-39019487 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 5 | rs569261242 | chr10:39019487-39019488 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 6 | rs531524651 | chr10:39019495-39019496 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 7 | rs551314636 | chr10:39019501-39019502 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 8 | rs571502873 | chr10:39019505-39019506 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 9 | rs534044009 | chr10:39019520-39019521 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 10 | rs374155484 | chr10:39019524-39019525 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 11 | rs554129856 | chr10:39019536-39019537 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
Variant related diseases (count:39)
| Disease | PMID | Source |
|---|---|---|
| Endometrioid adenocarcinoma | 16974079 | CNVD |
| Breast cancer | 17603634 | CNVD |
| Endometrial cancer | 22040021 | CNVD |
| Glioblastoma multiforme | 21080181 | CNVD |
| Breast cancer | 21264507 | CNVD |
| Esophageal squamous carcinoma | 21637470 | CNVD |
| Phyllodes tumor | 17334353 | CNVD |
| Acute lymphoblastic leukemia | 17690704 | CNVD |
| Pancreatic endocrine tumor | 17639061 | CNVD |
| Gastric cancer | 17908304 | CNVD |
| Chordoma | 21602918 | CNVD |
| Ewing''s sarcoma | 21437220 | CNVD |
| Medulloblastoma | 21979893 | CNVD |
| Melanoma | 18172304 | CNVD |
| Pleomorphic xanthoastrocytoma | 20730472 | CNVD |
| Lung cancer | 18438408 | CNVD |
| Thoracic aortic aneurysm | 21092924 | CNVD |
| Ewing''s sarcoma | 17952124 | CNVD |
| Oral cancer | 21386901 | CNVD |
| T-cell prolymphocytic leukemia | 19278963 | CNVD |
| Hodgkin''s lymphoma | 17606441 | CNVD |
| Acute lymphoblastic leukemia | 20435627 | CNVD |
| Breast cancer | 21858162 | CNVD |
| Acute lymphoblastic leukemia | 20724749 | CNVD |
| Autism | 22495311 | CNVD |
| T-cell lymphomas | 19863542 | CNVD |
| Esophageal cancer | 21851588 | CNVD |
| Non-muscle invasive bladder neoplasm | 19445696 | CNVD |
| Prostate cancer | 18632612 | CNVD |
| Glioblastoma multiforme | 22286061 | CNVD |
| Colorectal cancer | 20459617 | CNVD |
| Ovine squamous-cell carcinoma | 17599052 | CNVD |
| Central neurocytomas | 17123091 | CNVD |
| Neurocytoma | 17123091 | CNVD |
| small cell lung cancer | 20016488 | CNVD |
| Schizophrenia | 20967226 | CNVD |
| Myelofibrosis | 22110671 | CNVD |
| Non-syndromic sensorineural hearing loss | 17122850 | CNVD |
| Breast cancer | 21509527 | CNVD |
Chromatin state (count:0 , 50 per page) page:
| No data |
