Variant report

Variant	esv3424756
Chromosome Location	chr10:28432379-28432866
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 43 )

Variant overlapped rSNPs/rCNVs (count:24 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs200482071	chr10:28432393-28432394	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs71489883	chr10:28432394-28432395	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs71391011	chr10:28432396-28432397	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs111600720	chr10:28432506-28432507	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs11006894	chr10:28432508-28432509	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
6	rs528539928	chr10:28432511-28432512	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs35025558	chr10:28432515-28432516	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs567215916	chr10:28432517-28432518	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs568667026	chr10:28432554-28432555	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs117599614	chr10:28432555-28432556	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs534392762	chr10:28432673-28432674	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs551281460	chr10:28432738-28432739	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs569542712	chr10:28432750-28432751	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs377752011	chr10:28432785-28432786	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs59897641	chr10:28432786-28432787	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs61446541	chr10:28432819-28432820	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs199523322	chr10:28432822-28432823	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs71391012	chr10:28432827-28432828	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs71489612	chr10:28432829-28432830	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs2985511	chr10:28432831-28432832	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs77027388	chr10:28432833-28432834	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs552767884	chr10:28432837-28432838	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs576874474	chr10:28432850-28432851	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs534414353	chr10:28432863-28432864	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:43)

Disease	PMID	Source
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
T-cell lymphomas	19863542	CNVD
Esophageal cancer	21851588	CNVD
Behavioral abnormalities	21522184	CNVD
Dysmorphic features	21522184	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Breast cancer	21364760	CNVD
abnormal development	18461090	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	22048815	CNVD
Myelofibrosis	22110671	CNVD
Prostate cancer	22341455	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:28376000-28438400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
2	chr10:28403600-28443200	Weak transcription	Stomach Smooth Muscle	stomach
3	chr10:28413200-28440600	Weak transcription	Left Ventricle	heart
4	chr10:28417000-28449200	Weak transcription	Pancreas	Pancrea
5	chr10:28417600-28458000	Weak transcription	Aorta	Aorta
6	chr10:28426400-28435800	Weak transcription	Primary neutrophils fromperipheralblood	blood
7	chr10:28426800-28438400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr10:28427200-28438200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr10:28427200-28440600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr10:28427200-28448600	Weak transcription	Primary hematopoietic stem cells	blood
11	chr10:28427400-28435600	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chr10:28427600-28436000	Weak transcription	Primary T cells fromperipheralblood	blood
13	chr10:28428000-28435600	Weak transcription	Primary T helper cells PMA-I stimulated	--
14	chr10:28428200-28436000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr10:28428400-28434400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr10:28428400-28435600	Weak transcription	Primary T cells from cord blood	blood
17	chr10:28428400-28435800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr10:28428400-28435800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr10:28430000-28437600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr10:28430600-28441400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
21	chr10:28431600-28436600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr10:28431800-28434200	Weak transcription	Monocytes-CD14+_RO01746	blood
23	chr10:28432000-28439600	Strong transcription	Primary monocytes fromperipheralblood	blood

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