Variant report

Variant	esv3424999
Chromosome Location	chr3:90451762-90456060
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 529 )
Associated
traits (count: 66 )

Variant overlapped rSNPs/rCNVs (count:529 , 50 per page) page: 1 2 3 4 5 6 7 ... 11

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs534767540	chr3:90451771-90451772	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs375618373	chr3:90451783-90451784	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs191064446	chr3:90451797-90451798	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs113124849	chr3:90451803-90451804	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs538502890	chr3:90451828-90451829	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs558761286	chr3:90451829-90451830	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs575642903	chr3:90451842-90451843	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs200979359	chr3:90451857-90451858	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs530583118	chr3:90451866-90451867	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs202087639	chr3:90451870-90451871	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs200558055	chr3:90451872-90451873	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs201603616	chr3:90451873-90451874	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs373079928	chr3:90451875-90451876	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs112425006	chr3:90451881-90451882	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs544481389	chr3:90451885-90451886	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs62267497	chr3:90451891-90451892	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs113202928	chr3:90451893-90451894	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs62267498	chr3:90451894-90451895	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs112495062	chr3:90451898-90451899	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs62267499	chr3:90451899-90451900	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs574693909	chr3:90451910-90451911	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs540615407	chr3:90451911-90451912	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs560430215	chr3:90451915-90451916	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs111767210	chr3:90451927-90451928	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs568337183	chr3:90451929-90451930	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs62267500	chr3:90451932-90451933	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs62267501	chr3:90451938-90451939	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs562709249	chr3:90451961-90451962	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs144422010	chr3:90451978-90451979	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs201196628	chr3:90451991-90451992	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs112753657	chr3:90452000-90452001	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs12638423	chr3:90452007-90452008	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs376715994	chr3:90452026-90452027	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs79428622	chr3:90452035-90452036	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs566933404	chr3:90452039-90452040	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs74972494	chr3:90452046-90452047	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs370419708	chr3:90452047-90452048	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs112036684	chr3:90452055-90452056	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs199634016	chr3:90452060-90452061	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs535909929	chr3:90452063-90452064	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs9714267	chr3:90452070-90452071	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs9714276	chr3:90452074-90452075	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs201887559	chr3:90452075-90452076	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs535518180	chr3:90452077-90452078	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs113274861	chr3:90452078-90452079	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs9713564	chr3:90452088-90452089	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs9713214	chr3:90452089-90452090	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs546571756	chr3:90452096-90452097	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs9713565	chr3:90452097-90452098	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs186167949	chr3:90452098-90452099	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:66)

Disease	PMID	Source
Insulin resistance	16721378	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Ewing''s sarcoma	21437220	CNVD
Neuroblastoma	21484798	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Oral cancer	19627613	CNVD
Renal cell carcinoma	19461508	CNVD
Epithelial cancer	22065749	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Acute myeloid leukemia	16864856	CNVD
Liposarcoma	21253554	CNVD
Basal cell lymphoma	21115979	CNVD
Endometrial cancer	22040021	CNVD
Pancreatic endocrine tumor	20981439	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	17387387	CNVD
Oral cancer	21386901	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Acute myeloid leukemia	20729466	CNVD
Medulloblastoma	21979893	CNVD
Basal cell lymphoma	17053054	CNVD
Esophageal cancer	21851588	CNVD
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Retinoblastoma	21504564	CNVD
Renal cell carcinoma	21668985	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	17603634	CNVD
Uveal melanoma	20484589	CNVD
Autism	22495311	CNVD
Lung cancer	18438408	CNVD
Hirschsprung''s Disease	21712996	CNVD
Hepatocellular carcinoma	16750200	CNVD
Cancer	21183584	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Bipolar disorder	20877625	CNVD
Bipolar disorder	21956041	CNVD
Bipolar disorder	22241247	CNVD
Biliary cancer	18923514	CNVD
Prostate cancer	21965145	CNVD
Cancer	21129771	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Cervical cancer	21062161	CNVD
Squamous cell cancer	20885788	CNVD
Melanoma	18172304	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Metanephric adenoma	20802469	CNVD
Bipolar disorder	18458673	CNVD
Breast cancer	22032731	CNVD
Soft tissue tumor	16732325	CNVD
Neurodevelopmental disorder	22521361	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
craniofacial dysmorphism	21918468	CNVD
Cancer	20164920	CNVD
Lung cancer	19547694	CNVD
Cancer	20164919	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	18458336	CNVD
Non-syndromic sensorineural hearing loss	19587683	CNVD

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:90446800-90455400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
2	chr3:90447200-90455200	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
3	chr3:90447400-90455200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr3:90452400-90453000	Enhancers	Dnd41	blood
5	chr3:90453400-90455200	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
6	chr3:90453600-90454000	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr3:90453600-90455200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
8	chr3:90454000-90454800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr3:90454400-90454600	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
10	chr3:90454600-90455200	ZNF genes & repeats	ES-WA7 Cell Line	embryonic stem cell
11	chr3:90454800-90455200	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr3:90455000-90455200	ZNF genes & repeats	Fetal Heart	heart
13	chr3:90455200-90456200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr3:90455200-90456200	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr3:90455200-90456200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr3:90455400-90456200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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