Variant report

Variant	esv3425469
Chromosome Location	chr7:38400687-38405561
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	BATF	chr7:38402249-38402527	GM12878	blood:	n/a	chr7:38402448-38402459
2	BATF	chr7:38402244-38402635	GM12878	blood:	n/a	chr7:38402448-38402459
3	BCL11A	chr7:38402227-38402452	GM12878	blood:	n/a	chr7:38402374-38402383
4	BHLHE40	chr7:38403131-38403176	GM12878	blood:	n/a	n/a
5	BHLHE40	chr7:38403094-38403268	K562	blood:	n/a	n/a
6	CBX3	chr7:38403002-38403403	K562	blood:	n/a	n/a
7	CEBPB	chr7:38402455-38402609	HepG2	liver:	n/a	n/a
8	CHD1	chr7:38402581-38402583	GM12878	blood:	n/a	n/a
9	CHD2	chr7:38403060-38403224	GM12878	blood:	n/a	n/a
10	CTCF	chr7:38403079-38403336	Kidney_OC	kidney:	n/a	chr7:38403193-38403209 chr7:38403192-38403210 chr7:38403194-38403207 chr7:38403187-38403208 chr7:38403194-38403207
11	CTCF	chr7:38403120-38403270	AoAF	blood vessel:	n/a	chr7:38403193-38403209 chr7:38403192-38403210 chr7:38403194-38403207 chr7:38403187-38403208 chr7:38403194-38403207
12	CTCF	chr7:38403040-38403190	HCM	heart:	n/a	n/a
13	CTCF	chr7:38402440-38402590	GM12873	blood:	n/a	n/a
14	CTCF	chr7:38403120-38403270	GM12867	blood:	n/a	chr7:38403193-38403209 chr7:38403192-38403210 chr7:38403194-38403207 chr7:38403187-38403208 chr7:38403194-38403207
15	CTCF	chr7:38402440-38402590	GM12875	blood:	n/a	n/a
16	CTCF	chr7:38403140-38403290	HBMEC	blood vessel:	n/a	chr7:38403193-38403209 chr7:38403192-38403210 chr7:38403194-38403207 chr7:38403187-38403208 chr7:38403194-38403207
17	CTCF	chr7:38402830-38403539	SK-N-SH	brain:	n/a	chr7:38403193-38403209 chr7:38403192-38403210 chr7:38403194-38403207 chr7:38403187-38403208 chr7:38403194-38403207
18	CTCF	chr7:38403140-38403290	NHDF-neo	bronchial:	n/a	chr7:38403193-38403209 chr7:38403192-38403210 chr7:38403194-38403207 chr7:38403187-38403208 chr7:38403194-38403207
19	CTCF	chr7:38403120-38403270	GM12878	blood:	n/a	chr7:38403193-38403209 chr7:38403192-38403210 chr7:38403194-38403207 chr7:38403187-38403208 chr7:38403194-38403207
20	CTCF	chr7:38403160-38403310	HVMF	connective:	n/a	chr7:38403193-38403209 chr7:38403192-38403210 chr7:38403194-38403207 chr7:38403187-38403208 chr7:38403194-38403207
21	CTCF	chr7:38403104-38403329	Pancreas_OC	pancreas:	n/a	chr7:38403193-38403209 chr7:38403192-38403210 chr7:38403194-38403207 chr7:38403187-38403208 chr7:38403194-38403207
22	CTCF	chr7:38403044-38403355	K562	blood:	n/a	chr7:38403193-38403209 chr7:38403192-38403210 chr7:38403194-38403207 chr7:38403187-38403208 chr7:38403194-38403207
23	CTCF	chr7:38403140-38403290	NHEK	skin:	n/a	chr7:38403193-38403209 chr7:38403192-38403210 chr7:38403194-38403207 chr7:38403187-38403208 chr7:38403194-38403207
24	CTCF	chr7:38403140-38403290	AG04449	skin:	n/a	chr7:38403193-38403209 chr7:38403192-38403210 chr7:38403194-38403207 chr7:38403187-38403208 chr7:38403194-38403207
25	CTCF	chr7:38403040-38403190	GM12873	blood:	n/a	n/a
26	CTCF	chr7:38403020-38403170	HRPEpiC	eye:	n/a	n/a
27	CTCF	chr7:38403082-38403334	Medullo	brain:	n/a	chr7:38403193-38403209 chr7:38403192-38403210 chr7:38403194-38403207 chr7:38403187-38403208 chr7:38403194-38403207
28	CTCF	chr7:38402440-38402590	GM12872	blood:	n/a	n/a
29	CTCF	chr7:38403066-38403359	IMR90	lung:	n/a	chr7:38403193-38403209 chr7:38403192-38403210 chr7:38403194-38403207 chr7:38403187-38403208 chr7:38403194-38403207
30	CTCF	chr7:38403140-38403290	HCFaa	heart:	n/a	chr7:38403193-38403209 chr7:38403192-38403210 chr7:38403194-38403207 chr7:38403187-38403208 chr7:38403194-38403207
31	CTCF	chr7:38403077-38403336	MCF-7	breast:	n/a	chr7:38403193-38403209 chr7:38403192-38403210 chr7:38403194-38403207 chr7:38403187-38403208 chr7:38403194-38403207
32	CTCF	chr7:38403120-38403270	AG04449	skin:	n/a	chr7:38403193-38403209 chr7:38403192-38403210 chr7:38403194-38403207 chr7:38403187-38403208 chr7:38403194-38403207
33	CTCF	chr7:38402420-38402570	GM12870	blood:	n/a	n/a
34	CTCF	chr7:38403067-38403335	GM12878	blood:	n/a	chr7:38403193-38403209 chr7:38403192-38403210 chr7:38403194-38403207 chr7:38403187-38403208 chr7:38403194-38403207
35	CTCF	chr7:38403140-38403290	Caco-2	colon:	n/a	chr7:38403193-38403209 chr7:38403192-38403210 chr7:38403194-38403207 chr7:38403187-38403208 chr7:38403194-38403207
36	CTCF	chr7:38403140-38403290	AoAF	blood vessel:	n/a	chr7:38403193-38403209 chr7:38403192-38403210 chr7:38403194-38403207 chr7:38403187-38403208 chr7:38403194-38403207
37	CTCF	chr7:38403120-38403270	HCPEpiC	choroid plexus:	n/a	chr7:38403193-38403209 chr7:38403192-38403210 chr7:38403194-38403207 chr7:38403187-38403208 chr7:38403194-38403207
38	CTCF	chr7:38403140-38403290	BE2_C	brain:	n/a	chr7:38403193-38403209 chr7:38403192-38403210 chr7:38403194-38403207 chr7:38403187-38403208 chr7:38403194-38403207
39	CTCF	chr7:38403040-38403190	HVMF	connective:	n/a	n/a
40	CTCF	chr7:38403140-38403290	RPTEC	kidney:	n/a	chr7:38403193-38403209 chr7:38403192-38403210 chr7:38403194-38403207 chr7:38403187-38403208 chr7:38403194-38403207
41	CTCF	chr7:38402324-38402455	Spleen_OC	spleen:	n/a	n/a
42	CTCF	chr7:38403042-38403368	Fibrobl	skin:	n/a	chr7:38403193-38403209 chr7:38403192-38403210 chr7:38403194-38403207 chr7:38403187-38403208 chr7:38403194-38403207
43	CTCF	chr7:38403140-38403290	GM12865	blood:	n/a	chr7:38403193-38403209 chr7:38403192-38403210 chr7:38403194-38403207 chr7:38403187-38403208 chr7:38403194-38403207
44	CTCF	chr7:38402987-38403492	MCF-7	breast:	n/a	chr7:38403193-38403209 chr7:38403192-38403210 chr7:38403194-38403207 chr7:38403187-38403208 chr7:38403194-38403207
45	CTCF	chr7:38403160-38403310	HUVEC	blood vessel:	n/a	chr7:38403193-38403209 chr7:38403192-38403210 chr7:38403194-38403207 chr7:38403187-38403208 chr7:38403194-38403207
46	CTCF	chr7:38403140-38403290	GM12875	blood:	n/a	chr7:38403193-38403209 chr7:38403192-38403210 chr7:38403194-38403207 chr7:38403187-38403208 chr7:38403194-38403207
47	CTCF	chr7:38403120-38403270	HFF-Myc	foreskin:	n/a	chr7:38403193-38403209 chr7:38403192-38403210 chr7:38403194-38403207 chr7:38403187-38403208 chr7:38403194-38403207
48	CTCF	chr7:38403105-38403290	ECC-1	luminal epithelium:	n/a	chr7:38403193-38403209 chr7:38403192-38403210 chr7:38403194-38403207 chr7:38403187-38403208 chr7:38403194-38403207
49	CTCF	chr7:38403140-38403290	HEK293	kidney:	n/a	chr7:38403193-38403209 chr7:38403192-38403210 chr7:38403194-38403207 chr7:38403187-38403208 chr7:38403194-38403207
50	CTCF	chr7:38403058-38403361	GM12891	blood:	n/a	chr7:38403193-38403209 chr7:38403192-38403210 chr7:38403194-38403207 chr7:38403187-38403208 chr7:38403194-38403207

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr7:38403507-38403557	HCF	heart:	n/a
2	chr7:38403507-38403557	Hela-S3	cervix:	n/a
3	chr7:38403507-38403557	HCM	heart:	n/a
4	chr7:38403507-38403557	Caco-2	colon:	n/a
5	chr7:38403507-38403557	NT2-D1	testis:	n/a
6	chr7:38403507-38403557	GM12891	blood:	n/a
7	chr7:38403507-38403557	HEK293	kidney:	embryo
8	chr7:38403507-38403557	PANC-1	pancreas:	n/a
9	chr7:38403507-38403557	SKMC	muscle:	n/a
10	chr7:38403507-38403557	HRCEpiC	kidney:	n/a
11	chr7:38403507-38403557	HNPCEpiC	eye:	n/a
12	chr7:38403507-38403557	AG09319	gingival:	n/a
13	chr7:38403507-38403557	RPTEC	kidney:	n/a
14	chr7:38403507-38403557	MCF-7	breast:	n/a
15	chr7:38403507-38403557	T-47D	breast:	n/a
16	chr7:38403507-38403557	GM12892	blood:	n/a
17	chr7:38403507-38403557	HUVEC	blood vessel:	n/a
18	chr7:38403507-38403557	PFSK-1	brain:	n/a
19	chr7:38403507-38403557	HCT-116	colon:	n/a
20	chr7:38403507-38403557	NHBE	bronchial:	n/a
21	chr7:38403507-38403557	HAEpiC	amniotic membrane:	n/a
22	chr7:38403507-38403557	MCF10A-Er-Src	breast:	n/a
23	chr7:38403507-38403557	AoSMC	blood vessel:	n/a
24	chr7:38403507-38403557	ovcar-3	ovarian:	n/a
25	chr7:38403507-38403557	H1-hESC	embryonic stem cell:	embryo
26	chr7:38403507-38403557	AG09309	skin:	n/a
27	chr7:38403507-38403557	SAEC	small airway:	n/a
28	chr7:38403507-38403557	AG10803	skin:	n/a
29	chr7:38403507-38403557	HMEC	breast:	n/a
30	chr7:38403507-38403557	LNCaP	prostate:	n/a
31	chr7:38403507-38403557	HL-60	blood:	n/a
32	chr7:38403507-38403557	AG04449	skin:	fetal
33	chr7:38403507-38403557	SK-N-MC	brain:	n/a
34	chr7:38403507-38403557	GM12878	blood:	n/a
35	chr7:38403507-38403557	ProgFib	skin:	n/a
36	chr7:38403507-38403557	U87	brain:	n/a
37	chr7:38403507-38403557	HRE	kidney:	n/a
38	chr7:38403507-38403557	NHDF-neo	bronchial:	n/a
39	chr7:38403507-38403557	K562	blood:	n/a
40	chr7:38403507-38403557	AG04450	lung:	fetal
41	chr7:38403507-38403557	PrEC	prostate:	n/a
42	chr7:38403507-38403557	NB4	blood:	n/a
43	chr7:38403507-38403557	BJ	skin:	n/a
44	chr7:38403507-38403557	HPAEpiC	pulmonary alveolar:	n/a
45	chr7:38403507-38403557	HEEpiC	esophagus:	n/a
46	chr7:38403507-38403557	HIPEpiC	eye:	n/a
47	chr7:38403507-38403557	SK-N-SH	brain:	n/a
48	chr7:38403507-38403557	NH-A	brain:	n/a
49	chr7:38403507-38403557	SK-N-SH_RA	brain:	n/a
50	chr7:38403507-38403557	Hepatocyte	liver:	n/a

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-STARD3NL-5	chr7:38404346-38404812	NONHSAT120184
2	lnc-STARD3NL-4	chr7:38400418-38400732	NONHSAT120183
3	lnc-STARD3NL-6	chr7:38405093-38405440	NONHSAT120185

Variant related genes	Relation type
TRGV3	TF binding region
TRGV2	TF binding region
TRGV3	CpG island
TRGV2	CpG island

Extended variants
information (count: 299 )
Associated
traits (count: 82 )

Variant overlapped rSNPs/rCNVs (count:299 , 50 per page) page: 1 2 3 4 5 6

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs10229383	chr7:38400706-38400707	Enhancers Weak transcription Flanking Active TSS Active TSS	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs533962926	chr7:38400718-38400719	Enhancers Weak transcription Flanking Active TSS Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
3	rs13309081	chr7:38400734-38400735	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
4	rs13309054	chr7:38400742-38400743	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
5	rs528616362	chr7:38400755-38400756	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
6	rs549096403	chr7:38400768-38400769	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
7	rs187315605	chr7:38400788-38400789	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
8	rs374615544	chr7:38400815-38400816	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
9	rs117672013	chr7:38400820-38400821	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
10	rs191413605	chr7:38400840-38400841	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
11	rs574191490	chr7:38400920-38400921	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
12	rs551374109	chr7:38400933-38400934	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
13	rs568182662	chr7:38400959-38400960	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
14	rs571524825	chr7:38400966-38400967	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
15	rs537344514	chr7:38400978-38400979	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
16	rs28620617	chr7:38400984-38400985	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
17	rs573898900	chr7:38400990-38400991	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
18	rs535564775	chr7:38401013-38401014	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
19	rs369996384	chr7:38401028-38401029	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
20	rs555860333	chr7:38401036-38401037	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
21	rs572346154	chr7:38401038-38401039	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
22	rs541456198	chr7:38401046-38401047	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
23	rs141123852	chr7:38401064-38401065	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
24	rs577870912	chr7:38401065-38401066	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
25	rs543720771	chr7:38401082-38401083	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
26	rs183892521	chr7:38401119-38401120	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
27	rs529471828	chr7:38401188-38401189	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
28	rs377199056	chr7:38401196-38401197	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
29	rs559436649	chr7:38401200-38401201	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
30	rs528180409	chr7:38401209-38401210	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
31	rs150298299	chr7:38401232-38401233	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
32	rs571286823	chr7:38401243-38401244	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
33	rs537309505	chr7:38401244-38401245	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
34	rs575440053	chr7:38401256-38401257	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
35	rs10262443	chr7:38401274-38401275	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
36	rs149540733	chr7:38401278-38401279	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
37	rs143199933	chr7:38401302-38401303	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
38	rs566125636	chr7:38401373-38401374	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
39	rs534812878	chr7:38401383-38401384	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
40	rs187823613	chr7:38401389-38401390	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	Overlapped CNVs	n/a
41	rs10262641	chr7:38401403-38401404	Enhancers Weak transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
42	rs55991774	chr7:38401405-38401406	Enhancers Weak transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
43	rs572007507	chr7:38401407-38401408	Enhancers Weak transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
44	rs71877803	chr7:38401408-38401409	Enhancers Weak transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
45	rs60249652	chr7:38401409-38401410	Enhancers Weak transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
46	rs56048942	chr7:38401415-38401416	Enhancers Weak transcription Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
47	rs56214610	chr7:38401417-38401418	Enhancers Weak transcription Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
48	rs141789646	chr7:38401431-38401432	Enhancers Weak transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a
49	rs2975065	chr7:38401522-38401523	Enhancers Weak transcription Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
50	rs2975064	chr7:38401559-38401560	Enhancers Weak transcription Active TSS	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:82)

Disease	PMID	Source
Medulloblastoma	21979893	CNVD
Lynch syndrome	18415027	CNVD
Biliary cancer	19435499	CNVD
Cancer	16751803	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Wilms tumour	21544195	CNVD
Glioblastoma multiforme	17387387	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Neuroblastoma	18923191	CNVD
Glioma	21971842	CNVD
Glioblastoma multiforme	21080181	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Oral cancer	21386901	CNVD
colon cancer	17210682	CNVD
Lung adenocarcinoma	21810691	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Colorectal cancer	19359472	CNVD
Hypothalamic hamartomas	18252217	CNVD
Human rectal carcinomas	16397240	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Medulloblastoma	18056178	CNVD
Basal cell lymphoma	17170743	CNVD
Ewing''s sarcoma	21437220	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Melanoma	18172304	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Stenocardia	21860640	CNVD
Vasospasm	21860640	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Lung cancer	18438408	CNVD
lymphocytic leukemia	21291569	CNVD
Autism	22495311	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Gastrointestinal stromal cancer	20877625	CNVD
Cancer	21637783	CNVD
Squamous cell cancer	20885788	CNVD
Breast cancer	16397240	CNVD
Non-small cell lung cancer	21829676	CNVD
Glioblastoma multiforme	17002787	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Glioblastoma multiforme	18628472	CNVD
Cancer	21183584	CNVD
Breast cancer	21785460	CNVD
Follicular lymphoma	20505157	CNVD
Williams-beuren syndrome	22470819	CNVD
Renal cell carcinoma	18765545	CNVD
Breast cancer	21364760	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute myeloid leukemia	21251322	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Multiple myeloma	16461302	CNVD
Glioblastoma multiforme	21750150	CNVD
Hepatocellular carcinoma	16750200	CNVD
Prostate cancer	18632612	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Acute myeloid leukemia	17237825	CNVD
Breast cancer	17899364	CNVD
Breast cancer	20409316	CNVD
Acute monocytic leukemia	16498392	CNVD
Myelofibrosis	22110671	CNVD
Colorectal cancer	21645411	CNVD
Colorectal cancer	19455253	CNVD
Glioblastoma multiforme	22286061	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
Sezary syndrome	18413736	CNVD
Gastric cancer	24379144	CNVD
Pancreatic cancer	17952125	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:170 , 50 per page) page: 1 2 3 4

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:38381400-38408000	Weak transcription	Right Atrium	heart
2	chr7:38389600-38413800	Weak transcription	K562	blood
3	chr7:38394400-38402200	Weak transcription	Spleen	Spleen
4	chr7:38397400-38402800	Active TSS	Thymus	Thymus
5	chr7:38397600-38403600	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr7:38397800-38400800	Active TSS	Primary T helper cells PMA-I stimulated	--
7	chr7:38398000-38401800	Active TSS	Primary T regulatory cells fromperipheralblood	blood
8	chr7:38398200-38403400	Enhancers	Primary hematopoietic stem cells	blood
9	chr7:38398400-38400800	Active TSS	GM12878-XiMat	blood
10	chr7:38398600-38414600	Weak transcription	Placenta	Placenta
11	chr7:38399000-38400800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
12	chr7:38399000-38401000	Active TSS	Primary T cells fromperipheralblood	blood
13	chr7:38399200-38401000	Enhancers	Primary B cells from cord blood	blood
14	chr7:38399200-38403400	Enhancers	Primary B cells from peripheral blood	blood
15	chr7:38399400-38402200	Weak transcription	Primary neutrophils fromperipheralblood	blood
16	chr7:38399800-38402000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr7:38400000-38401800	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr7:38400000-38402200	Weak transcription	Duodenum Mucosa	Duodenum
19	chr7:38400200-38400800	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
20	chr7:38400200-38401200	Flanking Active TSS	Dnd41	blood
21	chr7:38400400-38401000	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
22	chr7:38400400-38401000	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
23	chr7:38400400-38401400	Flanking Active TSS	Primary T cells from cord blood	blood
24	chr7:38400400-38402000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
25	chr7:38400400-38403400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr7:38400600-38400800	Active TSS	Primary T helper naive cells from peripheral blood	blood
27	chr7:38400600-38400800	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
28	chr7:38400600-38401000	Enhancers	Primary T helper cells fromperipheralblood	blood
29	chr7:38400600-38401000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
30	chr7:38400600-38401000	Weak transcription	Fetal Thymus	thymus
31	chr7:38400600-38401000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
32	chr7:38400600-38401200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
33	chr7:38400600-38401200	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr7:38400600-38401200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
35	chr7:38400800-38401000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
36	chr7:38400800-38401800	Enhancers	Primary hematopoietic stem cells short term culture	blood
37	chr7:38400800-38401800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
38	chr7:38400800-38401800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
39	chr7:38400800-38402000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
40	chr7:38400800-38402000	Weak transcription	GM12878-XiMat	blood
41	chr7:38401000-38401200	Flanking Active TSS	Primary T cells fromperipheralblood	blood
42	chr7:38401000-38401200	Enhancers	Primary T helper cells PMA-I stimulated	--
43	chr7:38401000-38401200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
44	chr7:38401000-38401400	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
45	chr7:38401000-38401800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
46	chr7:38401000-38401800	Enhancers	Fetal Thymus	thymus
47	chr7:38401000-38402000	Weak transcription	Primary B cells from cord blood	blood
48	chr7:38401000-38402000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
49	chr7:38401000-38402000	Weak transcription	Monocytes-CD14+_RO01746	blood
50	chr7:38401200-38401600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

The 2.0 version of rSNPBase

Variant report

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