Variant report

Variant	esv3425511
Chromosome Location	chr11:101089865-101090383
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:101086186..101088013-chr11:101088184..101090911,2	MCF-7	breast:
2	chr11:100998136..101000438-chr11:101087310..101089950,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000082175	chromatin interactions

Extended variants
information (count: 35 )
Associated
traits (count: 80 )

Variant overlapped rSNPs/rCNVs (count:35 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs550963426	chr11:101089874-101089875	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
2	rs182871479	chr11:101089879-101089880	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
3	rs571149069	chr11:101089880-101089881	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
4	rs369696375	chr11:101089928-101089929	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
5	rs187857260	chr11:101089935-101089936	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
6	rs117946793	chr11:101089936-101089937	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
7	rs191910644	chr11:101089982-101089983	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs183910585	chr11:101089995-101089996	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs564593788	chr11:101090043-101090044	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs187668476	chr11:101090107-101090108	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs192525140	chr11:101090168-101090169	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs560707594	chr11:101090181-101090182	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs529718990	chr11:101090187-101090188	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs184212912	chr11:101090189-101090190	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs59237411	chr11:101090195-101090196	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
16	rs377586158	chr11:101090215-101090216	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs539192640	chr11:101090235-101090236	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs560108363	chr11:101090237-101090238	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs552807296	chr11:101090245-101090246	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs73579773	chr11:101090274-101090275	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs569306349	chr11:101090275-101090276	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs537968799	chr11:101090277-101090278	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs76810158	chr11:101090278-101090279	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs113530758	chr11:101090287-101090288	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs76316166	chr11:101090288-101090289	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs555078775	chr11:101090301-101090302	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs568360376	chr11:101090315-101090316	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs533973414	chr11:101090360-101090361	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs552808156	chr11:101090361-101090362	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs139514433	chr11:101090364-101090365	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs72976179	chr11:101090365-101090366	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs544779328	chr11:101090371-101090372	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs558491703	chr11:101090372-101090373	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs79089400	chr11:101090379-101090380	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs75465428	chr11:101090381-101090382	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:80)

Disease	PMID	Source
Medulloblastoma	21979893	CNVD
Gastric cancer	17908304	CNVD
Multiple myeloma	20724749	CNVD
Wilms tumour	21544195	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Intellectual disability	22102821	CNVD
Autism	22495311	CNVD
Acute myeloid leukemia	20729466	CNVD
Cancer	21637783	CNVD
Acute myeloid leukemia	16864856	CNVD
Chronic lymphocytic leukemia	21795749	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Neuroblastoma	21484798	CNVD
Ewing''s sarcoma	21437220	CNVD
Oral cancer	21386901	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	20837533	CNVD
Breast cancer	21264507	CNVD
Cervical cancer	21063398	CNVD
Glioblastoma multiforme	19960244	CNVD
Liposarcoma	21253554	CNVD
Neuroblastoma	18923524	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Neuroblastoma	17533364	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Glioblastoma multiforme	21080181	CNVD
Cancer	16751803	CNVD
Seminomas	18059402	CNVD
Cervical cancer	21062161	CNVD
Esophageal squamous carcinoma	18350619	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Neuroblastoma	18923191	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	22429812	CNVD
Breast cancer	16608533	CNVD
T-cell lymphomas	19863542	CNVD
Melanoma	18172304	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Basal cell lymphoma	17053054	CNVD
Hepatocellular carcinoma	16785998	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Acute myeloid leukemia	21251322	CNVD
Breast cancer	21858162	CNVD
Breast cancer	21785460	CNVD
Melanoma	22183965	CNVD
Breast cancer	21958427	CNVD
Lung cancer	18438408	CNVD
Ewing''s sarcoma	17952124	CNVD
Renal cell carcinoma	18194544	CNVD
Breast cancer	17133270	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
small cell lung cancer	20016488	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	17603634	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Basal cell lymphoma	16790693	CNVD
Chronic lymphocytic leukemia	21670202	CNVD
Breast cancer	21364760	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Ovarian clear cell carcinoma	19293255	CNVD
Mental retardation	19966786	CNVD
Non-small cell lung cancer	21829676	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Mantle cell lymphoma	19029149	CNVD
Multiple myeloma	16616336	CNVD
Intracranial aneurysm	16715129	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Urothelial carcinoma	21177765	CNVD
Esophageal cancer	21851588	CNVD
Multiple myeloma	17550852	CNVD

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101082600-101095000	Weak transcription	Ovary	ovary

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