Variant report

Variant	esv3425785
Chromosome Location	chr16:76398943-76402494
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 192 )
Associated
traits (count: 70 )

Variant overlapped rSNPs/rCNVs (count:192 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs200999749	chr16:76398945-76398946	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs185791890	chr16:76398946-76398947	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs560578426	chr16:76398947-76398948	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs147331055	chr16:76398961-76398962	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs3974451	chr16:76398989-76398990	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
6	rs201476378	chr16:76398990-76398991	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs199518001	chr16:76398992-76398993	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs576060089	chr16:76398997-76398998	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs144858303	chr16:76399013-76399014	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs561333443	chr16:76399032-76399033	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs574195622	chr16:76399043-76399044	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs540626803	chr16:76399068-76399069	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs564760991	chr16:76399092-76399093	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs533473010	chr16:76399114-76399115	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs8059413	chr16:76399120-76399121	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
16	rs570179542	chr16:76399147-76399148	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs529389127	chr16:76399154-76399155	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs190157775	chr16:76399178-76399179	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs556765078	chr16:76399196-76399197	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs12932600	chr16:76399216-76399217	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs545673072	chr16:76399235-76399236	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs534971180	chr16:76399270-76399271	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs8043911	chr16:76399287-76399288	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
24	rs149693799	chr16:76399313-76399314	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs8062657	chr16:76399399-76399400	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
26	rs8063803	chr16:76399402-76399403	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
27	rs575868702	chr16:76399407-76399408	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs8062793	chr16:76399430-76399431	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
29	rs181860874	chr16:76399458-76399459	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs187347648	chr16:76399505-76399506	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs72628213	chr16:76399518-76399519	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
32	rs563948041	chr16:76399521-76399522	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs200910405	chr16:76399522-76399523	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs375631326	chr16:76399543-76399544	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs533651708	chr16:76399544-76399545	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs192121680	chr16:76399545-76399546	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs76364829	chr16:76399564-76399565	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs546140072	chr16:76399565-76399566	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs529557739	chr16:76399581-76399582	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs569480722	chr16:76399584-76399585	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs140993780	chr16:76399591-76399592	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs143154449	chr16:76399605-76399606	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs148246861	chr16:76399620-76399621	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs201194628	chr16:76399643-76399644	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs377597283	chr16:76399648-76399649	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs371265803	chr16:76399649-76399650	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs75493875	chr16:76399658-76399659	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs386385107	chr16:76399664-76399665	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs35586454	chr16:76399667-76399668	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs17766856	chr16:76399779-76399780	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:70)

Disease	PMID	Source
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Autism	19415332	CNVD
Medulloblastoma	21979893	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Schizophrenia	22958593	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Autism	22495311	CNVD
Wilms tumour	21544195	CNVD
Prostate cancer	18632612	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Breast cancer	17850661	CNVD
Breast cancer	16702952	CNVD
Medulloblastoma	16968546	CNVD
Prostate cancer	19242612	CNVD
Cancer	22429812	CNVD
Ewing''s sarcoma	21437220	CNVD
Ewing''s sarcoma	22429812	CNVD
Melanoma	18172304	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	20837533	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Multiple myeloma	21628407	CNVD
Ovarian cancer	22174824	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Breast cancer	17001317	CNVD
Breast cancer	17133270	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Breast cancer	17603634	CNVD
Prostate cancer	16573809	CNVD
Prostate cancer	17245344	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Medulloblastoma	16783165	CNVD
Breast cancer	21806811	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Melanoma	22183965	CNVD
small cell lung cancer	20016488	CNVD
Myelofibrosis	22110671	CNVD
Poland''s syndrome	22110015	CNVD
Neuroblastoma	21899760	CNVD
Liver carcinoma	19366792	CNVD
Prostate cancer	21965145	CNVD
Cancer	21183584	CNVD
Ovarian cancer	20844748	CNVD
Lung cancer	18438408	CNVD
Prostate cancer	19156837	CNVD
Acute myeloid leukemia	17377590	CNVD
Breast cancer	20409316	CNVD
Hepatocellular carcinoma	16750200	CNVD
Breast cancer	21509527	CNVD
Schizophrenia	23813976	CNVD
Lung cancer	24585490	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:76390800-76406400	Weak transcription	Brain Angular Gyrus	brain
2	chr16:76394600-76409400	Weak transcription	Brain Hippocampus Middle	brain
3	chr16:76395400-76421800	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr16:76399200-76401600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links