Variant report

Variant	esv3426001
Chromosome Location	chr9:85586132-85588080
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 84 )
Associated
traits (count: 68 )

Variant overlapped rSNPs/rCNVs (count:84 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs73465591	chr9:85586141-85586142	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs558975035	chr9:85586202-85586203	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs112345827	chr9:85586268-85586269	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs532858951	chr9:85586385-85586386	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs117189452	chr9:85586395-85586396	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs146701171	chr9:85586401-85586402	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs75682826	chr9:85586471-85586472	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs2792079	chr9:85586501-85586502	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
9	rs375947392	chr9:85586557-85586558	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs111492298	chr9:85586637-85586638	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs535807043	chr9:85586643-85586644	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs148867025	chr9:85586672-85586673	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs572520798	chr9:85586681-85586682	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs539931183	chr9:85586722-85586723	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs558266013	chr9:85586769-85586770	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs574542870	chr9:85586808-85586809	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs34762067	chr9:85586851-85586852	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs35597692	chr9:85586852-85586853	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs536873780	chr9:85586858-85586859	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs561801570	chr9:85586864-85586865	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs202218645	chr9:85586869-85586870	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs28561466	chr9:85586872-85586873	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
23	rs145847825	chr9:85586882-85586883	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs370558529	chr9:85586883-85586884	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs10650007	chr9:85586902-85586903	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs540971269	chr9:85586903-85586904	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs111719692	chr9:85586917-85586918	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs566447081	chr9:85586931-85586932	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs545138556	chr9:85586934-85586935	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs201429486	chr9:85586943-85586944	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs532796119	chr9:85586983-85586984	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs369859080	chr9:85586994-85586995	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs551037342	chr9:85586995-85586996	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs140905851	chr9:85587004-85587005	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs71498036	chr9:85587005-85587006	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs111546402	chr9:85587006-85587007	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs372900943	chr9:85587025-85587026	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs375868808	chr9:85587026-85587027	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs111421534	chr9:85587057-85587058	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs113329912	chr9:85587058-85587059	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs112421269	chr9:85587059-85587060	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs68177072	chr9:85587060-85587061	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs372842969	chr9:85587061-85587062	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs2653802	chr9:85587107-85587108	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs2653803	chr9:85587181-85587182	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs188519625	chr9:85587218-85587219	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs550357708	chr9:85587254-85587255	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs565024501	chr9:85587282-85587283	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs548149335	chr9:85587283-85587284	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs2653804	chr9:85587288-85587289	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:68)

Disease	PMID	Source
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Medulloblastoma	21979893	CNVD
microdeletion syndrome	16199537	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Cancer	20164919	CNVD
Urothelial carcinoma	21177765	CNVD
Renal cell carcinoma	21668985	CNVD
Autism	22495311	CNVD
Melanoma	18172304	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Cancer	16751803	CNVD
Myelofibrosis	22110671	CNVD
lymphocytic leukemia	21291569	CNVD
Leukemia	17361228	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Glioblastoma	16823260	CNVD
Leukemia	18688285	CNVD
Non-small cell lung cancer	21044232	CNVD
Brain cancer	20823417	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Astrocytoma	17387387	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Renal cell carcinoma	19461508	CNVD
Neuroblastoma	18923191	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Heart disease	21282601	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Lung cancer	18438408	CNVD
small cell lung cancer	20016488	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute myeloid leukemia	21251322	CNVD
Hepatocellular carcinoma	16750200	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Breast cancer	17603634	CNVD
Acute myeloid leukemia	20729466	CNVD
Oral cancer	21386901	CNVD
Glioblastoma multiforme	21750150	CNVD
Cancer	21183584	CNVD
Bipolar disorder	18458673	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Wilms tumour	21544195	CNVD
Prostate cancer	18632612	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Gastric cancer	17908304	CNVD
Urothelial cell carcinoma	18451213	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Renal cell carcinoma	18765545	CNVD
Astrocytoma	22246337	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Gastrointestinal stromal cancer	20877625	CNVD
Pancreatic cancer	17952125	CNVD
XY gonadal dysgenesis	20685758	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85579800-85596200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links