Variant report

Variant	esv3426236
Chromosome Location	chr18:25434654-25437752
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:25428285..25431235-chr18:25432716..25435281,2	MCF-7	breast:

Extended variants
information (count: 79 )
Associated
traits (count: 68 )

Variant overlapped rSNPs/rCNVs (count:79 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs180722716	chr18:25436410-25436411	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs185864133	chr18:25436419-25436420	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs539605324	chr18:25436457-25436458	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs557924332	chr18:25436458-25436459	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs191213296	chr18:25436463-25436464	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs182947365	chr18:25436466-25436467	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs111219355	chr18:25436519-25436520	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs186593119	chr18:25436535-25436536	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs190446673	chr18:25436543-25436544	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs183098172	chr18:25436566-25436567	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs187745070	chr18:25436574-25436575	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs192464426	chr18:25436606-25436607	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs184170557	chr18:25436636-25436637	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs187591139	chr18:25436637-25436638	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs192802110	chr18:25436667-25436668	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs184594879	chr18:25436668-25436669	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs28892988	chr18:25436670-25436671	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs571323426	chr18:25436693-25436694	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs555898673	chr18:25436717-25436718	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs574345328	chr18:25436718-25436719	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs28761024	chr18:25436748-25436749	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs541760751	chr18:25436749-25436750	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs560354895	chr18:25436776-25436777	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs28798138	chr18:25436779-25436780	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs546066262	chr18:25436780-25436781	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs564251974	chr18:25436797-25436798	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs147047355	chr18:25436801-25436802	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs12955722	chr18:25436810-25436811	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
29	rs546649829	chr18:25436815-25436816	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs372395323	chr18:25436822-25436823	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs529243203	chr18:25436844-25436845	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs570970732	chr18:25436859-25436860	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs191972549	chr18:25436887-25436888	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs11874907	chr18:25436897-25436898	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs184395011	chr18:25436916-25436917	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs138295857	chr18:25436918-25436919	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs551590945	chr18:25436929-25436930	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs569879372	chr18:25436965-25436966	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs114590326	chr18:25436972-25436973	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs189074874	chr18:25436974-25436975	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs567972021	chr18:25436981-25436982	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs535474192	chr18:25436991-25436992	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs115994868	chr18:25436997-25436998	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs572396680	chr18:25437006-25437007	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs546105231	chr18:25437039-25437040	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs367955668	chr18:25437065-25437066	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs181860616	chr18:25437070-25437071	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs576276296	chr18:25437075-25437076	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs143804249	chr18:25437105-25437106	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs112645596	chr18:25437112-25437113	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:68)

Disease	PMID	Source
Esophageal squamous carcinoma	18350619	CNVD
Follicular lymphoma	20505157	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Neuroblastoma	18923191	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Medulloblastoma	21979893	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Trisomy 18 syndrome	17576883	CNVD
lymphocytic leukemia	21291569	CNVD
Barrett''s syndrome	19417022	CNVD
Ewing''s sarcoma	17952124	CNVD
Multiple myeloma	17550852	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Glioblastoma multiforme	21922591	CNVD
Melanoma	18172304	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Lung cancer	18438408	CNVD
18q deletion syndrome	19533772	CNVD
Acute myeloid leukemia	16864856	CNVD
Colorectal cancer	21102417	CNVD
Colorectal cancer	20709793	CNVD
Pancreatic cancer	21811562	CNVD
Basal cell lymphoma	21115979	CNVD
Mucosa-associated lymphoid tissue lymphomas	21459788	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Oligodendroglial tumors	17285580	CNVD
colon cancer	17210682	CNVD
Breast cancer	21785460	CNVD
Hepatocellular carcinoma	16750200	CNVD
Prostate cancer	16573809	CNVD
Autism	16446308	CNVD
Colorectal cancer	19359472	CNVD
Colorectal cancer	16272173	CNVD
Human rectal carcinomas	16397240	CNVD
Medulloblastoma	18056178	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Cancer	16751803	CNVD
Metanephric adenoma	20802469	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	17133270	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Colorectal cancer	16774939	CNVD
Colorectal cancer	21297112	CNVD
Myelofibrosis	22110671	CNVD
Colorectal cancer	21645411	CNVD
Glioblastoma multiforme	17002787	CNVD
Cancer	21183584	CNVD
Breast cancer	17603634	CNVD
Thyroid cancer	19087340	CNVD
Urothelial carcinoma	21177765	CNVD
Acute myeloid leukemia	19651600	CNVD
Oral cancer	21386901	CNVD
Colorectal cancer	16912164	CNVD
Renal cell carcinoma	19150565	CNVD
Multiple myeloma	16616336	CNVD
Colorectal cancer	19150955	CNVD
Breast cancer	21364760	CNVD
Acute lymphoblastic leukemia	20435627	CNVD

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:25436400-25440000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr18:25437600-25438800	Enhancers	Fetal Heart	heart

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