Variant report

Variant	esv3427167
Chromosome Location	chr10:23433696-23435794
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 87 )
Associated
traits (count: 39 )

Variant overlapped rSNPs/rCNVs (count:87 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs369689577	chr10:23433738-23433739	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs558177004	chr10:23433802-23433803	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs555086292	chr10:23433844-23433845	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs568054553	chr10:23433915-23433916	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs72405033	chr10:23433950-23433951	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs58321812	chr10:23433951-23433952	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs200075798	chr10:23433952-23433953	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs398013007	chr10:23433956-23433957	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs369684728	chr10:23433964-23433965	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs182965914	chr10:23433968-23433969	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs187675832	chr10:23433969-23433970	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs148192363	chr10:23434001-23434002	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs577312024	chr10:23434016-23434017	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs535480514	chr10:23434017-23434018	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs556661414	chr10:23434027-23434028	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs141125687	chr10:23434033-23434034	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs572565336	chr10:23434049-23434050	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs543270382	chr10:23434063-23434064	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs370634458	chr10:23434089-23434090	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs559494997	chr10:23434178-23434179	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs570360920	chr10:23434191-23434192	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs377607327	chr10:23434212-23434213	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs190888272	chr10:23434255-23434256	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs182549940	chr10:23434267-23434268	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs531009715	chr10:23434282-23434283	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs117602041	chr10:23434294-23434295	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs34683030	chr10:23434309-23434310	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs4506535	chr10:23434370-23434371	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
29	rs537542327	chr10:23434379-23434380	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs529184860	chr10:23434405-23434406	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs368299524	chr10:23434439-23434440	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs35625965	chr10:23434464-23434465	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs370176284	chr10:23434465-23434466	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs397721642	chr10:23434476-23434477	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs71504893	chr10:23434559-23434560	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs71821902	chr10:23434573-23434574	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs72098757	chr10:23434574-23434575	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs61169031	chr10:23434579-23434580	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs67956816	chr10:23434580-23434581	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs55698614	chr10:23434601-23434602	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs370418668	chr10:23434602-23434603	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs386370927	chr10:23434606-23434607	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs373883900	chr10:23434664-23434665	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs139074415	chr10:23434692-23434693	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs142591321	chr10:23434728-23434729	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs7893600	chr10:23434744-23434745	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	disease
47	rs145995144	chr10:23434776-23434777	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs139993393	chr10:23434781-23434782	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs536722940	chr10:23434811-23434812	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
50	rs115107759	chr10:23434819-23434820	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:39)

Disease	PMID	Source
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
T-cell lymphomas	19863542	CNVD
Esophageal cancer	21851588	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	21364760	CNVD
Acute lymphoblastic leukemia	18458336	CNVD
Behavioral abnormalities	21522184	CNVD
Dysmorphic features	21522184	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Glioblastoma multiforme	22286061	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23433000-23437200	Weak transcription	Pancreas	Pancrea
2	chr10:23433600-23434600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr10:23434800-23435000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr10:23434800-23435400	Bivalent/Poised TSS	HepG2	liver
5	chr10:23434800-23435400	Bivalent Enhancer	K562	blood
6	chr10:23435000-23435200	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr10:23435000-23435200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr10:23435000-23435400	Bivalent Enhancer	Placenta	Placenta
9	chr10:23435200-23435400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
10	chr10:23435200-23437200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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