Variant report
| Variant | esv3427307 |
|---|---|
| Chromosome Location | chr3:24570818-24571022 |
| allele | n/a |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:5)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:5 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr3:24569309..24573994-chr3:24576073..24580821,8 | K562 | blood: | |
| 2 | chr3:24533943..24537246-chr3:24568972..24573245,4 | K562 | blood: | |
| 3 | chr3:24541584..24544034-chr3:24570108..24572918,2 | K562 | blood: | |
| 4 | chr3:24560064..24565093-chr3:24569358..24577733,9 | K562 | blood: | |
| 5 | chr3:24570782..24571363-chr3:24624251..24625134,3 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000265028 | chromatin interactions |
| ENSG00000228791 | chromatin interactions |
| ENSG00000151090 | chromatin interactions |
Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | rs559426157 | chr3:24570820-24570821 | Weak transcription | Chromatin interactive region | 3 gene(s) | Overlapped CNVs | n/a |
| 2 | rs76429309 | chr3:24570829-24570830 | Weak transcription | Chromatin interactive region | 3 gene(s) | Overlapped CNVs | n/a |
| 3 | rs563820482 | chr3:24570937-24570938 | Weak transcription | Chromatin interactive region | 3 gene(s) | Overlapped CNVs | n/a |
| 4 | rs181325487 | chr3:24570940-24570941 | Weak transcription | Chromatin interactive region | 3 gene(s) | Overlapped CNVs | n/a |
| 5 | rs9864374 | chr3:24570955-24570956 | Weak transcription | Chromatin interactive region | 3 gene(s) | LD-proxies of rSNPOverlapped rCNV | n/a |
| 6 | rs9864136 | chr3:24570972-24570973 | Weak transcription | Chromatin interactive region | 3 gene(s) | LD-proxies of rSNPOverlapped rCNV | n/a |
| 7 | rs528361704 | chr3:24570977-24570978 | Weak transcription | Chromatin interactive region | 3 gene(s) | Overlapped CNVs | n/a |
| 8 | rs546607987 | chr3:24571006-24571007 | Weak transcription | Chromatin interactive region | 3 gene(s) | Overlapped CNVs | n/a |
| 9 | rs568233809 | chr3:24571011-24571012 | Weak transcription | Chromatin interactive region | 3 gene(s) | Overlapped CNVs | n/a |
| 10 | rs535334116 | chr3:24571021-24571022 | Weak transcription | Chromatin interactive region | 3 gene(s) | Overlapped CNVs | n/a |
Variant related diseases (count:69)
| Disease | PMID | Source |
|---|---|---|
| Esophageal squamous carcinoma | 18405350 | CNVD |
| Chronic lymphocytic leukemia | 21546498 | CNVD |
| Breast cancer | 17603634 | CNVD |
| Neuroblastoma | 17327916 | CNVD |
| Glioblastoma multiforme | 21080181 | CNVD |
| Neuroblastoma | 18923191 | CNVD |
| Colorectal cancer | 21297112 | CNVD |
| Lynch syndrome | 18415027 | CNVD |
| Renal cell carcinoma | 18592004 | CNVD |
| Acute myeloid leukemia | 20729466 | CNVD |
| Urothelial carcinoma | 18382360 | CNVD |
| Melanoma | 18172304 | CNVD |
| Cervical cancer | 21062161 | CNVD |
| Hirschsprung''s Disease | 21712996 | CNVD |
| head and neck squamous cell carcinoma | 17671120 | CNVD |
| Insulin resistance | 16721378 | CNVD |
| Neuroblastoma | 18664255 | CNVD |
| Monoclonal gammopathy of undetermined significance | 17077331 | CNVD |
| Multiple myeloma | 17077331 | CNVD |
| Oral squamous cell carcinoma | 17134496 | CNVD |
| Ewing''s sarcoma | 21437220 | CNVD |
| Neuroblastoma | 21484798 | CNVD |
| Non-small cell lung cancer | 21044232 | CNVD |
| Non-syndromic sensorineural hearing loss | 18471307 | CNVD |
| Oral cancer | 19627613 | CNVD |
| Renal cell carcinoma | 19461508 | CNVD |
| Epithelial cancer | 22065749 | CNVD |
| Acute lymphoblastic leukemia | 21390130 | CNVD |
| Acute myeloid leukemia | 16864856 | CNVD |
| Liposarcoma | 21253554 | CNVD |
| Basal cell lymphoma | 21115979 | CNVD |
| Endometrial cancer | 22040021 | CNVD |
| Pancreatic endocrine tumor | 20981439 | CNVD |
| Astrocytoma | 17387387 | CNVD |
| Breast cancer | 21264507 | CNVD |
| Esophageal squamous carcinoma | 21637470 | CNVD |
| Glioblastoma multiforme | 17387387 | CNVD |
| Oral cancer | 21386901 | CNVD |
| Cutaneous squamous cell carcinomas | 19131950 | CNVD |
| Medulloblastoma | 21979893 | CNVD |
| Basal cell lymphoma | 17053054 | CNVD |
| Esophageal cancer | 21851588 | CNVD |
| Uveal melanoma | 21693616 | CNVD |
| Retinoblastoma | 21504564 | CNVD |
| T-cell prolymphocytic leukemia | 17713554 | CNVD |
| lymphocytic leukemia | 21291569 | CNVD |
| T-cell prolymphocytic leukemia | 19278963 | CNVD |
| Renal cell carcinoma | 21668985 | CNVD |
| Acute lymphoblastic leukemia | 20435627 | CNVD |
| Thoracic aortic aneurysm | 21092924 | CNVD |
| Lung cancer | 20668451 | CNVD |
| Breast cancer | 20668451 | CNVD |
| Cancer | 20668451 | CNVD |
| Ovarian cancer | 20668451 | CNVD |
| Pancreas cancer | 20668451 | CNVD |
| Prostate cancer | 20668451 | CNVD |
| small cell lung cancer | 20016488 | CNVD |
| Lung cancer | 18438408 | CNVD |
| Intellectual disability | 22102821 | CNVD |
| Esophageal cancer | 20955586 | CNVD |
| Myeloproliferative neoplasm | 20015882 | CNVD |
| Endometrioid adenocarcinoma | 16974079 | CNVD |
| Myofibroblastic sarcoma | 19369631 | CNVD |
| Squamous cell cancer | 20885788 | CNVD |
| Breast cancer | 17133270 | CNVD |
| Uveal melanoma | 20484589 | CNVD |
| Autism | 22495311 | CNVD |
| Melanoma | 20688739 | CNVD |
| Myelofibrosis | 22110671 | CNVD |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:24566200-24591800 | Weak transcription | Psoas Muscle | Psoas |
| 2 | chr3:24566600-24572000 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
| 3 | chr3:24568600-24572600 | Weak transcription | Stomach Mucosa | stomach |
| 4 | chr3:24568800-24574200 | Weak transcription | Colon Smooth Muscle | Colon |
| 5 | chr3:24569000-24575200 | Weak transcription | Brain Germinal Matrix | brain |
