Variant report

Variant	esv3427417
Chromosome Location	chr11:85434734-85435095
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr11:85433656-85434833	MCF-7	breast:	n/a	chr11:85434732-85434743 chr11:85433993-85434002 chr11:85433986-85434007 chr11:85433989-85434005
2	POLR2A	chr11:85435011-85435109	MCF-7	breast:	n/a	n/a
3	POLR2A	chr11:85434526-85434922	K562	blood:	n/a	n/a
4	SP1	chr11:85433983-85434736	HCT-116	colon:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr11:85338344..85340985-chr11:85434050..85436369,2	K562	blood:
2	chr11:85374169..85377247-chr11:85434867..85438072,3	MCF-7	breast:
3	chr11:85427809..85429920-chr11:85433567..85435878,3	MCF-7	breast:
4	chr11:85406368..85408240-chr11:85432667..85435313,3	MCF-7	breast:
5	chr11:85433132..85435744-chr11:85522806..85525692,2	MCF-7	breast:
6	chr11:85434348..85438681-chr11:85520824..85523815,4	MCF-7	breast:
7	chr11:85374651..85376629-chr11:85434195..85435833,2	MCF-7	breast:
8	chr11:85434008..85435703-chr11:85538641..85540808,2	MCF-7	breast:
9	chr11:85433923..85435734-chr11:85518099..85520604,2	MCF-7	breast:

Variant related genes	Relation type
SYTL2	TF binding region
ENSG00000137504	chromatin interactions
ENSG00000137501	chromatin interactions
ENSG00000150672	chromatin interactions
ENSG00000171204	chromatin interactions

Extended variants
information (count: 16 )
Associated
traits (count: 87 )

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs188378819	chr11:85434746-85434747	Weak transcription Enhancers Strong transcription	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
2	rs547419107	chr11:85434749-85434750	Weak transcription Enhancers Strong transcription	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
3	rs565587466	chr11:85434767-85434768	Weak transcription Enhancers Strong transcription	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
4	rs536228420	chr11:85434768-85434769	Weak transcription Enhancers Strong transcription	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
5	rs610416	chr11:85434788-85434789	Weak transcription Enhancers Strong transcription	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
6	rs11234391	chr11:85434791-85434792	Weak transcription Enhancers Strong transcription	TF binding region Chromatin interactive region	5 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
7	rs574245550	chr11:85434863-85434864	Weak transcription Strong transcription	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
8	rs143715338	chr11:85434939-85434940	Weak transcription Strong transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
9	rs556295727	chr11:85434965-85434966	Weak transcription Strong transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
10	rs528241074	chr11:85434988-85434989	Weak transcription Strong transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
11	rs74621262	chr11:85434999-85435000	Weak transcription Strong transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
12	rs34653849	chr11:85435001-85435002	Weak transcription Strong transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
13	rs398045355	chr11:85435009-85435010	Weak transcription Strong transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
14	rs577715315	chr11:85435039-85435040	Weak transcription Strong transcription	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
15	rs545142392	chr11:85435091-85435092	Weak transcription Strong transcription	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
16	rs372794245	chr11:85435094-85435095	Weak transcription Strong transcription	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:87)

Disease	PMID	Source
Medulloblastoma	21979893	CNVD
Gastric cancer	17908304	CNVD
Multiple myeloma	20724749	CNVD
Wilms tumour	21544195	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Non-small cell lung cancer	21385341	CNVD
Intellectual disability	22102821	CNVD
Autism	22495311	CNVD
Acute myeloid leukemia	20729466	CNVD
Cancer	21637783	CNVD
Acute myeloid leukemia	16864856	CNVD
Chronic lymphocytic leukemia	21795749	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Neuroblastoma	21484798	CNVD
Ewing''s sarcoma	21437220	CNVD
Oral cancer	21386901	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	20837533	CNVD
Breast cancer	21264507	CNVD
Cervical cancer	21063398	CNVD
Glioblastoma multiforme	19960244	CNVD
Liposarcoma	21253554	CNVD
Neuroblastoma	18923524	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Neuroblastoma	17533364	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Multiple myeloma	16461302	CNVD
Glioblastoma multiforme	21080181	CNVD
Cancer	16751803	CNVD
Seminomas	18059402	CNVD
Cervical cancer	21062161	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	17899364	CNVD
Breast cancer	17157792	CNVD
Esophageal squamous carcinoma	18350619	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Neuroblastoma	18923191	CNVD
Multiple myeloma	16616336	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	22429812	CNVD
Breast cancer	21364760	CNVD
Ovarian neoplasms	16753589	CNVD
Breast cancer	16608533	CNVD
Myelofibrosis	22110671	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
Melanoma	18172304	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Colorectal cancer	16912164	CNVD
Mental retardation	17847001	CNVD
Melanoma	19509136	CNVD
Sudden cardiac death	19188705	CNVD
Prostate cancer	16573809	CNVD
Basal cell lymphoma	17053054	CNVD
Hepatocellular carcinoma	16785998	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Acute myeloid leukemia	21251322	CNVD
Breast cancer	21858162	CNVD
Breast cancer	21785460	CNVD
Cancer	22183965	CNVD
Melanoma	22183965	CNVD
Developmental delay	21147756	CNVD
Acute lymphoblastic leukemia	18458336	CNVD
Ductal carcinoma	22052326	CNVD
Obesity	20622171	CNVD
small cell lung cancer	20016488	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
Attention deficit hyperactivity disorder	22241247	CNVD
Breast cancer	21958427	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Cancer	20164919	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD
Lung cancer	18438408	CNVD
Cancer	17440070	CNVD

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85397200-85438600	Weak transcription	Colonic Mucosa	Colon
2	chr11:85412000-85436800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr11:85412000-85438000	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr11:85417600-85453000	Weak transcription	Gastric	stomach
5	chr11:85418400-85436400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr11:85422600-85448600	Weak transcription	Fetal Intestine Large	intestine
7	chr11:85422800-85448200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr11:85424000-85448600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr11:85430200-85437800	Weak transcription	Duodenum Mucosa	Duodenum
10	chr11:85430400-85436000	Weak transcription	Stomach Smooth Muscle	stomach
11	chr11:85430400-85436600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr11:85430400-85437400	Weak transcription	Stomach Mucosa	stomach
13	chr11:85430400-85459000	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr11:85430400-85480400	Weak transcription	Aorta	Aorta
15	chr11:85430600-85437200	Weak transcription	Fetal Kidney	kidney
16	chr11:85430600-85447000	Weak transcription	Ovary	ovary
17	chr11:85430800-85435200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr11:85430800-85445000	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr11:85430800-85447200	Weak transcription	Fetal Stomach	stomach
20	chr11:85430800-85448800	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr11:85430800-85459000	Weak transcription	Fetal Muscle Trunk	muscle
22	chr11:85431000-85436400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr11:85431000-85445200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr11:85431200-85436200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr11:85431200-85436200	Weak transcription	NH-A	brain
26	chr11:85431200-85436600	Weak transcription	Osteobl	bone
27	chr11:85431400-85436400	Weak transcription	A549	lung
28	chr11:85431400-85436600	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr11:85431400-85451600	Weak transcription	HSMMtube	muscle
30	chr11:85431600-85436600	Weak transcription	HSMM	muscle
31	chr11:85431800-85435400	Weak transcription	NHLF	lung
32	chr11:85431800-85436600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr11:85431800-85437600	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr11:85431800-85466600	Weak transcription	Brain Substantia Nigra	brain
35	chr11:85432000-85436600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr11:85432000-85436800	Weak transcription	HUES64 Cell Line	embryonic stem cell
37	chr11:85432000-85460800	Weak transcription	Fetal Muscle Leg	muscle
38	chr11:85432200-85448400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
39	chr11:85433000-85436000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr11:85433600-85435400	Weak transcription	Rectal Mucosa Donor 31	rectum
41	chr11:85433800-85434800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr11:85433800-85448600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
43	chr11:85434000-85439400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
44	chr11:85434200-85439800	Strong transcription	Primary T cells from cord blood	blood
45	chr11:85434400-85435200	Weak transcription	H1 Cell Line	embryonic stem cell
46	chr11:85434400-85435400	Weak transcription	NHDF-Ad	bronchial
47	chr11:85434400-85435800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr11:85434600-85436200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr11:85434600-85436200	Weak transcription	NHEK	skin
50	chr11:85434600-85436400	Weak transcription	HMEC	breast

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