Variant report

Variant	esv3428024
Chromosome Location	chr15:45584610-45586708
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:45570019..45572753-chr15:45585935..45587978,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000259520	chromatin interactions

Extended variants
information (count: 105 )
Associated
traits (count: 64 )

Variant overlapped rSNPs/rCNVs (count:105 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs554075165	chr15:45584610-45584611	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs77527080	chr15:45584611-45584612	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs570995962	chr15:45584615-45584616	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs113939449	chr15:45584625-45584626	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs58216387	chr15:45584626-45584627	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs527439317	chr15:45584659-45584660	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs374858980	chr15:45584685-45584686	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs539815140	chr15:45584715-45584716	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs556309331	chr15:45584752-45584753	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs369040773	chr15:45584778-45584779	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs542447995	chr15:45584802-45584803	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs372648157	chr15:45584815-45584816	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs555098415	chr15:45584817-45584818	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs112253673	chr15:45584825-45584826	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs571921094	chr15:45584861-45584862	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs61393197	chr15:45584904-45584905	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs7176687	chr15:45584924-45584925	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs531765738	chr15:45584930-45584931	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs551125926	chr15:45584975-45584976	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs569239979	chr15:45584999-45585000	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs563835724	chr15:45585024-45585025	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs532914705	chr15:45585064-45585065	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs543392040	chr15:45585073-45585074	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs563151735	chr15:45585076-45585077	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs532003376	chr15:45585083-45585084	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs77342224	chr15:45585103-45585104	Weak transcription	n/a	n/a	Overlapped CNVs	mRNA abundance
27	rs568628033	chr15:45585112-45585113	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs547825638	chr15:45585117-45585118	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs184520996	chr15:45585167-45585168	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs548054505	chr15:45585181-45585182	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs570934565	chr15:45585192-45585193	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs539580719	chr15:45585196-45585197	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs556494882	chr15:45585207-45585208	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs12913389	chr15:45585213-45585214	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs7178279	chr15:45585230-45585231	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs535703301	chr15:45585241-45585242	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs555235359	chr15:45585259-45585260	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs572055873	chr15:45585268-45585269	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs574816955	chr15:45585290-45585291	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs12913422	chr15:45585314-45585315	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs190043682	chr15:45585315-45585316	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs12914745	chr15:45585317-45585318	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs557567340	chr15:45585352-45585353	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs577633475	chr15:45585356-45585357	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs543174017	chr15:45585365-45585366	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs563247987	chr15:45585368-45585369	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs528890600	chr15:45585372-45585373	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs569594128	chr15:45585378-45585379	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs369841528	chr15:45585393-45585394	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs139429510	chr15:45585409-45585410	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:64)

Disease	PMID	Source
Ewing''s sarcoma	21437220	CNVD
Schizophrenia	19415332	CNVD
Breast cancer	22522925	CNVD
Autism	22495311	CNVD
Wilms tumour	21544195	CNVD
Testicular germ cell tumor	18059402	CNVD
cataract	16735990	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Medulloblastoma	21979893	CNVD
spastic paraplegia with thinning of corpus callosum	19105190	CNVD
Schizophrenia	21324950	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Disease	21824424	CNVD
Melanoma	18172304	CNVD
Colorectal cancer	16774939	CNVD
Gastric cancer	17167181	CNVD
Neuroblastoma	19435921	CNVD
Colorectal cancer	19359472	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Colorectal cancer	16272173	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Multiple myeloma	17550852	CNVD
Intellectual disability	22102821	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute myeloid leukemia	20729466	CNVD
Prostate cancer	16573809	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Multiple myeloma	20724749	CNVD
Lung cancer	18438408	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	21785460	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Ovarian cancer	22174824	CNVD
Prostate cancer	18632612	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Basal cell lymphoma	17053054	CNVD
Cancer	21129771	CNVD
Papillary thyroid carcinoma	22161024	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Breast cancer	21045282	CNVD
Breast cancer	22032731	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Gastrointestinal stromal cancer	20877625	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Myelofibrosis	22110671	CNVD
Hirschsprung''s Disease	21712996	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Breast cancer	16272173	CNVD
Hepatocellular carcinoma	16750200	CNVD
Abnormal phenotypes	18644119	CNVD
Cancer	16751803	CNVD
Melanoma	17363583	CNVD
Acute myeloid leukemia	19651601	CNVD
Marfan syndrome	17492313	CNVD
Esophageal adenocarcinoma	18820669	CNVD

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:45572200-45592000	Weak transcription	Right Atrium	heart
2	chr15:45586000-45586400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
3	chr15:45586600-45587200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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