Variant report

Variant	esv3428682
Chromosome Location	chr19:21733091-21735458
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 174 )
Associated
traits (count: 41 )

Variant overlapped rSNPs/rCNVs (count:174 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs540088515	chr19:21733096-21733097	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs562402349	chr19:21733190-21733191	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs529796778	chr19:21733241-21733242	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs548078297	chr19:21733269-21733270	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs35330229	chr19:21733283-21733284	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs200193479	chr19:21733284-21733285	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs200985708	chr19:21733285-21733286	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs202201821	chr19:21733286-21733287	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs560429448	chr19:21733299-21733300	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs527567287	chr19:21733317-21733318	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs8111885	chr19:21733334-21733335	ZNF genes & repeats Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
12	rs570781893	chr19:21733358-21733359	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs186929041	chr19:21733378-21733379	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs550160216	chr19:21733391-21733392	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs568416618	chr19:21733435-21733436	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs535994322	chr19:21733447-21733448	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs554066843	chr19:21733454-21733455	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs202039669	chr19:21733455-21733456	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs59916257	chr19:21733463-21733464	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs528124922	chr19:21733464-21733465	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs374930495	chr19:21733467-21733468	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs76036766	chr19:21733476-21733477	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs368431151	chr19:21733478-21733479	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs565969466	chr19:21733521-21733522	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs539664795	chr19:21733604-21733605	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs557992898	chr19:21733624-21733625	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs576335517	chr19:21733661-21733662	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs559049730	chr19:21733665-21733666	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs543812218	chr19:21733670-21733671	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs556169436	chr19:21733702-21733703	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs574437282	chr19:21733709-21733710	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs370581039	chr19:21733713-21733714	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs374931201	chr19:21733727-21733728	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs8101680	chr19:21733732-21733733	Weak transcription	n/a	n/a	Overlapped CNVs	mRNA abundance
35	rs560366318	chr19:21733741-21733742	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs527454827	chr19:21733748-21733749	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs546036310	chr19:21733767-21733768	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs8100932	chr19:21733773-21733774	Weak transcription	n/a	n/a	Overlapped CNVs	mRNA abundance
39	rs145586064	chr19:21733784-21733785	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs191412168	chr19:21733787-21733788	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs548554768	chr19:21733795-21733796	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs568437189	chr19:21733810-21733811	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs368682357	chr19:21733824-21733825	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs183688813	chr19:21733854-21733855	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs547515197	chr19:21733859-21733860	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs147712481	chr19:21733875-21733876	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs188657890	chr19:21733915-21733916	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs557931606	chr19:21733934-21733935	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs112010518	chr19:21733954-21733955	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs537788556	chr19:21733981-21733982	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:41)

Disease	PMID	Source
Medulloblastoma	16783165	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Prostate cancer	16573809	CNVD
Chordoma	18071362	CNVD
Metanephric adenoma	20802469	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Oligodendroglial tumors	17285580	CNVD
Oral cancer	21386901	CNVD
ovarian endometriomas	16273235	CNVD
Endometrial cancer	22040021	CNVD
Acute myeloid leukemia	16864856	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	17387387	CNVD
Cervical cancer	21063398	CNVD
Myelodysplastic syndrome	17634407	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Retinoblastoma	21504564	CNVD
Ovarian cancer	21720365	CNVD
Cancer	20164919	CNVD
Thoracic aortic aneurysm	21092924	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Prostate cancer	18632612	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
Lung cancer	18438408	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Myelofibrosis	22110671	CNVD
Cancer	21183584	CNVD
Colorectal cancer	20459617	CNVD
small cell lung cancer	20016488	CNVD
Ductal carcinoma	22052326	CNVD
Breast cancer	22522925	CNVD
Melanoma	20877625	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:21701000-21733400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr19:21720400-21740800	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr19:21726200-21737400	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr19:21726200-21737800	Weak transcription	Right Ventricle	heart
5	chr19:21726200-21737800	Weak transcription	Stomach Smooth Muscle	stomach
6	chr19:21726400-21740800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr19:21726600-21740800	Weak transcription	Placenta Amnion	Placenta Amnion

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links