Variant report

Variant	esv3429133
Chromosome Location	chr3:90388162-90422260
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3079 )
Associated
traits (count: 66 )

Variant overlapped rSNPs/rCNVs (count:3079 , 50 per page) page: 1 2 3 4 5 6 7 ... 62

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs529792488	chr3:90389804-90389805	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs541661649	chr3:90389823-90389824	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs567204179	chr3:90389840-90389841	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs534586903	chr3:90389851-90389852	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs557511398	chr3:90389857-90389858	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs143104268	chr3:90389858-90389859	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs533774159	chr3:90389888-90389889	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs372444675	chr3:90389889-90389890	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs536709382	chr3:90389895-90389896	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs188147113	chr3:90389897-90389898	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs115057115	chr3:90389905-90389906	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs573474514	chr3:90389911-90389912	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs542430783	chr3:90389919-90389920	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs552834303	chr3:90389920-90389921	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs573083999	chr3:90389925-90389926	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs545383027	chr3:90389946-90389947	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs565175980	chr3:90389953-90389954	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs530936607	chr3:90389956-90389957	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs561382809	chr3:90389963-90389964	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs569473184	chr3:90389998-90389999	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs530298959	chr3:90390004-90390005	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs146059698	chr3:90390011-90390012	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs563457498	chr3:90390012-90390013	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs532732245	chr3:90390034-90390035	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs182568820	chr3:90390038-90390039	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs571112558	chr3:90390051-90390052	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs140001104	chr3:90390071-90390072	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs556608025	chr3:90390075-90390076	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs567057655	chr3:90390082-90390083	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs530726717	chr3:90390090-90390091	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs141968742	chr3:90390098-90390099	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs565332433	chr3:90390113-90390114	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs573083417	chr3:90390119-90390120	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs544927694	chr3:90390121-90390122	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs200043665	chr3:90390123-90390124	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs552469709	chr3:90390128-90390129	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs372880348	chr3:90390134-90390135	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs572524529	chr3:90390145-90390146	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs541033845	chr3:90390153-90390154	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs570735046	chr3:90390159-90390160	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs544650828	chr3:90390163-90390164	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs528527491	chr3:90390168-90390169	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs201007764	chr3:90390192-90390193	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs201306312	chr3:90390201-90390202	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs199962119	chr3:90390215-90390216	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs530262284	chr3:90390220-90390221	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs201204948	chr3:90390221-90390222	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs113582345	chr3:90390223-90390224	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs560438177	chr3:90390225-90390226	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs113517253	chr3:90390227-90390228	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:66)

Disease	PMID	Source
Insulin resistance	16721378	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Ewing''s sarcoma	21437220	CNVD
Neuroblastoma	21484798	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Oral cancer	19627613	CNVD
Renal cell carcinoma	19461508	CNVD
Epithelial cancer	22065749	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Acute myeloid leukemia	16864856	CNVD
Liposarcoma	21253554	CNVD
Basal cell lymphoma	21115979	CNVD
Endometrial cancer	22040021	CNVD
Pancreatic endocrine tumor	20981439	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	17387387	CNVD
Oral cancer	21386901	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Acute myeloid leukemia	20729466	CNVD
Medulloblastoma	21979893	CNVD
Basal cell lymphoma	17053054	CNVD
Esophageal cancer	21851588	CNVD
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Retinoblastoma	21504564	CNVD
Renal cell carcinoma	21668985	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	17603634	CNVD
Uveal melanoma	20484589	CNVD
Autism	22495311	CNVD
Lung cancer	18438408	CNVD
Hirschsprung''s Disease	21712996	CNVD
Hepatocellular carcinoma	16750200	CNVD
Cancer	21183584	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Bipolar disorder	20877625	CNVD
Bipolar disorder	21956041	CNVD
Bipolar disorder	22241247	CNVD
Biliary cancer	18923514	CNVD
Prostate cancer	21965145	CNVD
Cancer	21129771	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Cervical cancer	21062161	CNVD
Squamous cell cancer	20885788	CNVD
Melanoma	18172304	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Metanephric adenoma	20802469	CNVD
Bipolar disorder	18458673	CNVD
Breast cancer	22032731	CNVD
Soft tissue tumor	16732325	CNVD
Neurodevelopmental disorder	22521361	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
craniofacial dysmorphism	21918468	CNVD
Cancer	20164920	CNVD
Lung cancer	19547694	CNVD
Cancer	20164919	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	18458336	CNVD
Non-syndromic sensorineural hearing loss	19587683	CNVD

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:90389800-90398200	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
2	chr3:90390400-90399600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr3:90392600-90392800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
4	chr3:90393000-90396800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr3:90393400-90394000	ZNF genes & repeats	HUVEC	blood vessel
6	chr3:90394000-90395600	Weak transcription	HUVEC	blood vessel
7	chr3:90395200-90396800	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
8	chr3:90395200-90397800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
9	chr3:90395400-90397600	ZNF genes & repeats	HepG2	liver
10	chr3:90395600-90395800	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr3:90395600-90395800	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
12	chr3:90395600-90395800	ZNF genes & repeats	Dnd41	blood
13	chr3:90395600-90395800	ZNF genes & repeats	GM12878-XiMat	blood
14	chr3:90395600-90395800	Flanking Bivalent TSS/Enh	Hela-S3	cervix
15	chr3:90395600-90395800	ZNF genes & repeats	HMEC	breast
16	chr3:90395600-90395800	ZNF genes & repeats	HSMM	muscle
17	chr3:90395600-90395800	ZNF genes & repeats	HSMMtube	muscle
18	chr3:90395600-90395800	ZNF genes & repeats	HUVEC	blood vessel
19	chr3:90395600-90395800	ZNF genes & repeats	K562	blood
20	chr3:90395600-90395800	ZNF genes & repeats	NH-A	brain
21	chr3:90395600-90395800	ZNF genes & repeats	NHDF-Ad	bronchial
22	chr3:90395600-90395800	ZNF genes & repeats	NHEK	skin
23	chr3:90395600-90395800	ZNF genes & repeats	NHLF	lung
24	chr3:90395600-90395800	ZNF genes & repeats	Osteobl	bone
25	chr3:90395600-90396400	ZNF genes & repeats	ES-WA7 Cell Line	embryonic stem cell
26	chr3:90395800-90396400	Weak transcription	NH-A	brain
27	chr3:90395800-90400400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr3:90395800-90402400	Weak transcription	K562	blood
29	chr3:90400400-90400600	ZNF genes & repeats	HUVEC	blood vessel
30	chr3:90401600-90407800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
31	chr3:90402000-90406000	ZNF genes & repeats	Dnd41	blood
32	chr3:90403000-90405800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr3:90404200-90418400	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
34	chr3:90408400-90409200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr3:90409800-90410600	ZNF genes & repeats	Liver	Liver
36	chr3:90411400-90417000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr3:90411800-90412400	Active TSS	Aorta	Aorta
38	chr3:90412400-90413600	Weak transcription	Aorta	Aorta
39	chr3:90413200-90418200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
40	chr3:90413400-90414000	ZNF genes & repeats	Psoas Muscle	Psoas
41	chr3:90413600-90413800	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr3:90413600-90413800	ZNF genes & repeats	HMEC	breast
43	chr3:90413600-90413800	Enhancers	HSMM	muscle
44	chr3:90413600-90414000	Bivalent Enhancer	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr3:90413600-90414000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
46	chr3:90413600-90414000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr3:90413600-90414000	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
48	chr3:90413600-90414000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr3:90413600-90414000	ZNF genes & repeats	Muscle Satellite Cultured Cells	--
50	chr3:90413600-90414000	Active TSS	Aorta	Aorta

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