Variant report

Variant	esv3430008
Chromosome Location	chr10:16364852-16365627
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 46 )

Variant overlapped rSNPs/rCNVs (count:38 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs11253912	chr10:16364854-16364855	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs192618877	chr10:16364872-16364873	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs575649141	chr10:16364874-16364875	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs183572212	chr10:16364876-16364877	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs55673346	chr10:16364962-16364963	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
6	rs576056034	chr10:16364972-16364973	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs571974753	chr10:16364981-16364982	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs542269881	chr10:16365025-16365026	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs543061622	chr10:16365039-16365040	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs561681262	chr10:16365051-16365052	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs386741359	chr10:16365067-16365068	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs7084487	chr10:16365068-16365069	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
13	rs188253710	chr10:16365078-16365079	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs193167369	chr10:16365134-16365135	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs375387546	chr10:16365177-16365178	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs551525751	chr10:16365198-16365199	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs148724745	chr10:16365225-16365226	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs549552959	chr10:16365244-16365245	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs77575235	chr10:16365317-16365318	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs79700098	chr10:16365344-16365345	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs374491399	chr10:16365359-16365360	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs368648292	chr10:16365366-16365367	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs371959512	chr10:16365369-16365370	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs372805952	chr10:16365372-16365373	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs117102688	chr10:16365402-16365403	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs567694275	chr10:16365407-16365408	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs77141008	chr10:16365429-16365430	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs199727784	chr10:16365449-16365450	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs553280534	chr10:16365459-16365460	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs141406955	chr10:16365476-16365477	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs386741360	chr10:16365478-16365479	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs538866088	chr10:16365481-16365482	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs184585418	chr10:16365503-16365504	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs114231795	chr10:16365531-16365532	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs377220996	chr10:16365532-16365533	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs146278747	chr10:16365550-16365551	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs573711281	chr10:16365553-16365554	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs575828079	chr10:16365557-16365558	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:46)

Disease	PMID	Source
Breast cancer	22032731	CNVD
Medulloblastoma	16783165	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Renal cell carcinoma	18765545	CNVD
Autism	22495311	CNVD
Neurodevelopmental disorder	22521361	CNVD
DiGeorge-Velo cardiofacial	22470819	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Breast cancer	21364760	CNVD
Esophageal cancer	21851588	CNVD
Adrenocortical carcinoma	18281524	CNVD
Digeorge syndrome	17576883	CNVD
Lung cancer	16773561	CNVD
Velocardiofacial syndrome	17576883	CNVD
Intracranial aneurysm	16715129	CNVD
Breast cancer	22048815	CNVD
Myelofibrosis	22110671	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Hepatocellular carcinoma	16750200	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:16362400-16369800	Weak transcription	H1 Cell Line	embryonic stem cell

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