Variant report

Variant	esv3430027
Chromosome Location	chr11:92869687-92875956
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 84 )
Associated
traits (count: 76 )

Variant overlapped rSNPs/rCNVs (count:84 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs540292258	chr11:92869694-92869695	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs377622367	chr11:92869698-92869699	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs373160336	chr11:92869721-92869722	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs377749430	chr11:92869738-92869739	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs112577493	chr11:92869749-92869750	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs558303826	chr11:92869773-92869774	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs576742678	chr11:92869781-92869782	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs201684126	chr11:92869803-92869804	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs544061642	chr11:92869807-92869808	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs562746200	chr11:92869835-92869836	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs534905336	chr11:92869893-92869894	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs550263726	chr11:92870123-92870124	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs28866894	chr11:92870519-92870520	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs530583956	chr11:92871261-92871262	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs10466329	chr11:92873753-92873754	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs10466330	chr11:92873911-92873912	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs28877037	chr11:92874478-92874479	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs541999994	chr11:92874810-92874811	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs201353995	chr11:92874816-92874817	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs202117594	chr11:92874850-92874851	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs200259202	chr11:92874870-92874871	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs201154926	chr11:92874996-92874997	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs199870046	chr11:92875000-92875001	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs200512910	chr11:92875018-92875019	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs112973091	chr11:92875049-92875050	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs113887032	chr11:92875276-92875277	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs199685090	chr11:92875290-92875291	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs61918925	chr11:92875299-92875300	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs61918926	chr11:92875312-92875313	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs61918927	chr11:92875329-92875330	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs61918928	chr11:92875339-92875340	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs61918929	chr11:92875342-92875343	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs61918930	chr11:92875353-92875354	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs61918931	chr11:92875356-92875357	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs61918932	chr11:92875357-92875358	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs61918933	chr11:92875362-92875363	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs61918934	chr11:92875366-92875367	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs61918935	chr11:92875374-92875375	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs61918936	chr11:92875375-92875376	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs61918937	chr11:92875376-92875377	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs61918938	chr11:92875384-92875385	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs61918939	chr11:92875386-92875387	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs61918940	chr11:92875390-92875391	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs61918941	chr11:92875395-92875396	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs61918942	chr11:92875396-92875397	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs61918943	chr11:92875414-92875415	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs61918944	chr11:92875420-92875421	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs61918945	chr11:92875425-92875426	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs61918946	chr11:92875429-92875430	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs61918947	chr11:92875432-92875433	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:76)

Disease	PMID	Source
Medulloblastoma	21979893	CNVD
Gastric cancer	17908304	CNVD
Multiple myeloma	20724749	CNVD
Wilms tumour	21544195	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Non-small cell lung cancer	21385341	CNVD
Intellectual disability	22102821	CNVD
Autism	22495311	CNVD
Acute myeloid leukemia	20729466	CNVD
Cancer	21637783	CNVD
Acute myeloid leukemia	16864856	CNVD
Chronic lymphocytic leukemia	21795749	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Neuroblastoma	21484798	CNVD
Ewing''s sarcoma	21437220	CNVD
Oral cancer	21386901	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	20837533	CNVD
Breast cancer	21264507	CNVD
Cervical cancer	21063398	CNVD
Glioblastoma multiforme	19960244	CNVD
Liposarcoma	21253554	CNVD
Neuroblastoma	18923524	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Neuroblastoma	17533364	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Glioblastoma multiforme	21080181	CNVD
Cancer	16751803	CNVD
Seminomas	18059402	CNVD
Cervical cancer	21062161	CNVD
Prostate cancer	18632612	CNVD
Esophageal squamous carcinoma	18350619	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Neuroblastoma	18923191	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	22429812	CNVD
Breast cancer	16608533	CNVD
T-cell lymphomas	19863542	CNVD
Melanoma	18172304	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Basal cell lymphoma	17053054	CNVD
Hepatocellular carcinoma	16785998	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Acute myeloid leukemia	21251322	CNVD
Breast cancer	21858162	CNVD
Breast cancer	21785460	CNVD
Cancer	22183965	CNVD
Melanoma	22183965	CNVD
Developmental delay	21147756	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	21958427	CNVD
Lung cancer	18438408	CNVD
Ewing''s sarcoma	17952124	CNVD
Renal cell carcinoma	18194544	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Breast cancer	17133270	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Ductal carcinoma	22052326	CNVD
Breast cancer	21364760	CNVD
small cell lung cancer	20016488	CNVD
Mental retardation	21062444	CNVD
Cancer	21499728	CNVD
Breast cancer	19181860	CNVD
Breast cancer	17603634	CNVD
Mantle cell lymphoma	19029149	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Basal cell lymphoma	16790693	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:92862800-92880400	Weak transcription	Aorta	Aorta
2	chr11:92864200-92876400	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr11:92866600-92880000	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr11:92867200-92896400	Weak transcription	Primary B cells from peripheral blood	blood
5	chr11:92868000-92876400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr11:92868000-92889000	Weak transcription	Adipose Nuclei	Adipose
7	chr11:92868400-92880000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr11:92868400-92914600	Weak transcription	Brain Substantia Nigra	brain
9	chr11:92869600-92869800	ZNF genes & repeats	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr11:92874000-92880400	Weak transcription	NH-A	brain
11	chr11:92875000-92878400	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr11:92875000-92892800	Weak transcription	Primary B cells from cord blood	blood
13	chr11:92875400-92910400	Weak transcription	Brain Cingulate Gyrus	brain
14	chr11:92875600-92876400	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr11:92875800-92880200	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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