Variant report
| Variant | esv3430135 |
|---|---|
| Chromosome Location | chr10:23574165-23574548 |
| allele | n/a |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | rs547336654 | chr10:23574170-23574171 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 2 | rs570446064 | chr10:23574299-23574300 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 3 | rs373883149 | chr10:23574301-23574302 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 4 | rs539019817 | chr10:23574384-23574385 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 5 | rs555719736 | chr10:23574406-23574407 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 6 | rs569446771 | chr10:23574424-23574425 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 7 | rs202203075 | chr10:23574441-23574442 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 8 | rs535168898 | chr10:23574451-23574452 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 9 | rs555974406 | chr10:23574487-23574488 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 10 | rs143830664 | chr10:23574491-23574492 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 11 | rs12413853 | chr10:23574498-23574499 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 12 | rs79092257 | chr10:23574548-23574549 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
Variant related diseases (count:38)
| Disease | PMID | Source |
|---|---|---|
| Breast cancer | 17133270 | CNVD |
| Endometrioid adenocarcinoma | 16974079 | CNVD |
| Breast cancer | 17603634 | CNVD |
| Endometrial cancer | 22040021 | CNVD |
| Glioblastoma multiforme | 21080181 | CNVD |
| Breast cancer | 21264507 | CNVD |
| Esophageal squamous carcinoma | 21637470 | CNVD |
| Phyllodes tumor | 17334353 | CNVD |
| Acute lymphoblastic leukemia | 17690704 | CNVD |
| Pancreatic endocrine tumor | 17639061 | CNVD |
| Gastric cancer | 17908304 | CNVD |
| Chordoma | 21602918 | CNVD |
| Ewing''s sarcoma | 21437220 | CNVD |
| Medulloblastoma | 21979893 | CNVD |
| Melanoma | 18172304 | CNVD |
| Pleomorphic xanthoastrocytoma | 20730472 | CNVD |
| Lung cancer | 18438408 | CNVD |
| Thoracic aortic aneurysm | 21092924 | CNVD |
| Ewing''s sarcoma | 17952124 | CNVD |
| Oral cancer | 21386901 | CNVD |
| Acute lymphoblastic leukemia | 20435627 | CNVD |
| T-cell prolymphocytic leukemia | 19278963 | CNVD |
| Hodgkin''s lymphoma | 17606441 | CNVD |
| Breast cancer | 21858162 | CNVD |
| Acute lymphoblastic leukemia | 20724749 | CNVD |
| Autism | 22495311 | CNVD |
| Acute lymphoblastic leukemia | 22237106 | CNVD |
| T-cell lymphomas | 19863542 | CNVD |
| Esophageal cancer | 21851588 | CNVD |
| small cell lung cancer | 20016488 | CNVD |
| Breast cancer | 21364760 | CNVD |
| Acute lymphoblastic leukemia | 18458336 | CNVD |
| Behavioral abnormalities | 21522184 | CNVD |
| Dysmorphic features | 21522184 | CNVD |
| low-grade B-cell lymphoma tumor | 18367492 | CNVD |
| Glioblastoma multiforme | 22286061 | CNVD |
| Pancreatic ductal adenocarcinoma | 19077451 | CNVD |
| Breast cancer | 22522925 | CNVD |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:23572400-23574200 | Enhancers | Pancreas | Pancrea |
| 2 | chr10:23573000-23582200 | Weak transcription | iPS DF 6.9 Cell Line | embryonic stem cell |
