Variant report

Variant	esv3431059
Chromosome Location	chr3:139395962-139398210
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:277)
CpG islands
(count:549)
Chromatin interactive
region (count:2)
LncRNA
region (count:7)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:277 , 50 per page) page: 1 2 3 4 5 6

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr3:139396401-139396817	HepG2	liver:	n/a	n/a
2	ARID3A	chr3:139396281-139396479	K562	blood:	n/a	n/a
3	ATF3	chr3:139396312-139396602	K562	blood:	n/a	n/a
4	BACH1	chr3:139396506-139396558	H1-hESC	embryonic stem cell:	n/a	n/a
5	BHLHE40	chr3:139396367-139396603	GM12878	blood:	n/a	n/a
6	BHLHE40	chr3:139395980-139397115	K562	blood:	n/a	n/a
7	CBX3	chr3:139396149-139396794	K562	blood:	n/a	n/a
8	CCNT2	chr3:139395932-139396984	K562	blood:	n/a	n/a
9	CHD2	chr3:139396714-139396748	H1-hESC	embryonic stem cell:	n/a	n/a
10	CHD2	chr3:139396565-139396636	K562	blood:	n/a	n/a
11	CTCF	chr3:139396300-139396450	GM12878	blood:	n/a	n/a
12	CTCF	chr3:139396266-139396681	K562	blood:	n/a	n/a
13	CTCF	chr3:139396340-139396490	GM12866	blood:	n/a	n/a
14	CTCF	chr3:139396340-139396490	GM12867	blood:	n/a	n/a
15	CTCF	chr3:139396378-139396499	GM12892	blood:	n/a	n/a
16	CTCF	chr3:139396260-139396410	GM12871	blood:	n/a	n/a
17	CTCF	chr3:139396416-139396454	Lung_OC	lung:	n/a	n/a
18	CTCF	chr3:139396315-139396515	HepG2	liver:	n/a	n/a
19	CTCF	chr3:139396360-139396510	Caco-2	colon:	n/a	n/a
20	CTCF	chr3:139396311-139396620	MCF-7	breast:	n/a	n/a
21	CTCF	chr3:139396280-139396590	GM12878	blood:	n/a	n/a
22	CTCF	chr3:139396340-139396490	HRE	kidney:	n/a	n/a
23	CTCF	chr3:139396355-139396472	MCF-7	breast:	n/a	n/a
24	CTCF	chr3:139396360-139396510	RPTEC	kidney:	n/a	n/a
25	CTCF	chr3:139396440-139396590	SAEC	small airway:	n/a	n/a
26	CTCF	chr3:139396320-139396470	K562	blood:	n/a	n/a
27	CTCF	chr3:139396355-139396445	A549	lung:	n/a	n/a
28	CTCF	chr3:139396320-139396470	GM12875	blood:	n/a	n/a
29	CTCF	chr3:139396417-139396456	HepG2	liver:	n/a	n/a
30	CTCF	chr3:139396333-139396531	GM19238	blood:	n/a	n/a
31	CTCF	chr3:139396280-139396430	HRE	kidney:	n/a	n/a
32	CTCF	chr3:139396300-139396450	Caco-2	colon:	n/a	n/a
33	CTCF	chr3:139396380-139396530	GM12868	blood:	n/a	n/a
34	CTCF	chr3:139396331-139396505	GM19240	blood:	n/a	n/a
35	CTCF	chr3:139396260-139396410	GM12873	blood:	n/a	n/a
36	CTCF	chr3:139396260-139396410	HCM	heart:	n/a	n/a
37	CTCF	chr3:139396360-139396510	GM12873	blood:	n/a	n/a
38	CTCF	chr3:139396380-139396530	HRPEpiC	eye:	n/a	n/a
39	CTCF	chr3:139396267-139396531	K562	blood:	n/a	n/a
40	CTCF	chr3:139396364-139396505	K562	blood:	n/a	n/a
41	CTCF	chr3:139396428-139396491	Kidney_OC	kidney:	n/a	n/a
42	CTCF	chr3:139396400-139396550	GM12869	blood:	n/a	n/a
43	CTCF	chr3:139396333-139396510	MCF-7	breast:	n/a	n/a
44	CTCF	chr3:139396320-139396470	HPF	lung:	n/a	n/a
45	CTCF	chr3:139396360-139396510	GM12864	blood:	n/a	n/a
46	CTCF	chr3:139396420-139396570	GM12872	blood:	n/a	n/a
47	CTCF	chr3:139396409-139396417	GM12891	blood:	n/a	n/a
48	CTCF	chr3:139396360-139396510	GM12878	blood:	n/a	n/a
49	CTCF	chr3:139396511-139396518	Kidney_OC	kidney:	n/a	n/a
50	CTCF	chr3:139396359-139396432	LNCaP	prostate:	n/a	n/a

(count:549 , 50 per page) page: 1 2 3 4 5 6 7 ... 11

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr3:139396487-139396537	ovcar-3	ovarian:	n/a
2	chr3:139396487-139396537	NB4	blood:	n/a
3	chr3:139396782-139396832	HL-60	blood:	n/a
4	chr3:139396782-139396832	HCPEpiC	choroid plexus:	n/a
5	chr3:139396852-139396902	PrEC	prostate:	n/a
6	chr3:139396487-139396537	PrEC	prostate:	n/a
7	chr3:139397901-139397951	PrEC	prostate:	n/a
8	chr3:139396924-139396974	HNPCEpiC	eye:	n/a
9	chr3:139397901-139397951	GM19239	blood:	n/a
10	chr3:139396782-139396832	Hela-S3	cervix:	n/a
11	chr3:139397901-139397951	GM12878	blood:	n/a
12	chr3:139396487-139396537	RPTEC	kidney:	n/a
13	chr3:139397901-139397951	T-47D	breast:	n/a
14	chr3:139396782-139396832	K562	blood:	n/a
15	chr3:139397901-139397951	Jurkat	blood:	n/a
16	chr3:139396924-139396974	IMR90	lung:	fetal
17	chr3:139398044-139398094	K562	blood:	n/a
18	chr3:139397179-139397229	NHBE	bronchial:	n/a
19	chr3:139396924-139396974	ProgFib	skin:	n/a
20	chr3:139398044-139398094	GM06990	blood:	n/a
21	chr3:139396852-139396902	T-47D	breast:	n/a
22	chr3:139396782-139396832	HRPEpiC	eye:	n/a
23	chr3:139396524-139396574	ECC-1	luminal epithelium:	n/a
24	chr3:139397363-139397413	Jurkat	blood:	n/a
25	chr3:139397179-139397229	MCF-7	breast:	n/a
26	chr3:139396487-139396537	H1-hESC	embryonic stem cell:	embryo
27	chr3:139397901-139397951	HNPCEpiC	eye:	n/a
28	chr3:139397179-139397229	PANC-1	pancreas:	n/a
29	chr3:139396524-139396574	AG09309	skin:	n/a
30	chr3:139397363-139397413	ECC-1	luminal epithelium:	n/a
31	chr3:139397901-139397951	GM06990	blood:	n/a
32	chr3:139398044-139398094	ProgFib	skin:	n/a
33	chr3:139397363-139397413	HCPEpiC	choroid plexus:	n/a
34	chr3:139397901-139397951	NT2-D1	testis:	n/a
35	chr3:139397363-139397413	HMEC	breast:	n/a
36	chr3:139397179-139397229	BJ	skin:	n/a
37	chr3:139398044-139398094	SAEC	small airway:	n/a
38	chr3:139396524-139396574	HEEpiC	esophagus:	n/a
39	chr3:139396487-139396537	T-47D	breast:	n/a
40	chr3:139396924-139396974	HCT-116	colon:	n/a
41	chr3:139396852-139396902	HCPEpiC	choroid plexus:	n/a
42	chr3:139396852-139396902	HMEC	breast:	n/a
43	chr3:139397179-139397229	LNCaP	prostate:	n/a
44	chr3:139396487-139396537	GM12878	blood:	n/a
45	chr3:139396487-139396537	MCF10A-Er-Src	breast:	n/a
46	chr3:139397179-139397229	PFSK-1	brain:	n/a
47	chr3:139396924-139396974	HCF	heart:	n/a
48	chr3:139396524-139396574	SK-N-MC	brain:	n/a
49	chr3:139396487-139396537	Hela-S3	cervix:	n/a
50	chr3:139396487-139396537	HIPEpiC	eye:	n/a

(count:2 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:139395742..139397404-chr3:139400797..139402363,2	K562	blood:
2	chr3:139396870..139399383-chr3:139403869..139405785,2	K562	blood:

(count:7 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-NMNAT3-1	chr3:139397462-139399830	NONHSAT092386
2	lnc-RBP1-5	chr3:139396547-139396846	NONHSAT092382
3	lnc-RBP1-5	chr3:139396547-139396760	NONHSAT092383
4	lnc-RBP1-5	chr3:139396547-139396670	NONHSAT092381
5	lnc-RBP1-5	chr3:139396547-139396578	NONHSAT092384
6	lnc-NMNAT3-1	chr3:139397462-139401406	ENSG00000261763.1
7	lnc-NMNAT3-1	chr3:139397464-139399833	ENSG00000249979

No data

Variant related genes	Relation type
NMNAT3	TF binding region
NMNAT3	CpG island
ENSG00000261763	chromatin interactions
SLC35B4	miRNA target sites

Extended variants
information (count: 107 )
Associated
traits (count: 55 )

Variant overlapped rSNPs/rCNVs (count:107 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs562737300	chr3:139395968-139395969	Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
2	rs551649338	chr3:139395990-139395991	Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
3	rs565522411	chr3:139395995-139395996	Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
4	rs527861340	chr3:139396014-139396015	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
5	rs190614564	chr3:139396062-139396063	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
6	rs567625665	chr3:139396108-139396109	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
7	rs531488987	chr3:139396112-139396113	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
8	rs6808215	chr3:139396162-139396163	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
9	rs183171239	chr3:139396172-139396173	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
10	rs570053716	chr3:139396216-139396217	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
11	rs538978373	chr3:139396232-139396233	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
12	rs373345296	chr3:139396262-139396263	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
13	rs558549384	chr3:139396334-139396335	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
14	rs572237772	chr3:139396350-139396351	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
15	rs549478852	chr3:139396384-139396385	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
16	rs534485695	chr3:139396387-139396388	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
17	rs73869371	chr3:139396389-139396390	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
18	rs78016158	chr3:139396403-139396404	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
19	rs3922708	chr3:139396450-139396451	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Enhancers	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
20	rs3856688	chr3:139396462-139396463	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Enhancers	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
21	rs139592392	chr3:139396487-139396488	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
22	rs368334245	chr3:139396550-139396551	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Enhancers	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
23	rs545714088	chr3:139396598-139396599	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
24	rs565404445	chr3:139396607-139396608	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
25	rs527906001	chr3:139396608-139396609	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
26	rs541219775	chr3:139396616-139396617	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
27	rs567038901	chr3:139396630-139396631	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
28	rs34463179	chr3:139396703-139396704	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
29	rs4549242	chr3:139396734-139396735	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
30	rs10935341	chr3:139396758-139396759	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
31	rs550291381	chr3:139396791-139396792	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
32	rs570092352	chr3:139396800-139396801	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
33	rs572979414	chr3:139396804-139396805	Bivalent/Poised TSS Active TSS Weak transcription Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
34	rs370824504	chr3:139396808-139396809	Bivalent/Poised TSS Active TSS Weak transcription Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
35	rs552462980	chr3:139396822-139396823	Bivalent/Poised TSS Active TSS Weak transcription Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
36	rs9816111	chr3:139396826-139396827	Bivalent/Poised TSS Active TSS Weak transcription Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
37	rs534822408	chr3:139396871-139396872	Bivalent/Poised TSS Active TSS Weak transcription Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
38	rs554429056	chr3:139396889-139396890	Bivalent/Poised TSS Active TSS Weak transcription Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
39	rs34293742	chr3:139396890-139396891	Bivalent/Poised TSS Active TSS Weak transcription Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
40	rs567905043	chr3:139396926-139396927	Bivalent/Poised TSS Active TSS Weak transcription Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
41	rs368733741	chr3:139396928-139396929	Bivalent/Poised TSS Active TSS Weak transcription Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
42	rs536797391	chr3:139396946-139396947	Bivalent/Poised TSS Active TSS Weak transcription Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
43	rs556617587	chr3:139397034-139397035	Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
44	rs185649766	chr3:139397073-139397074	Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
45	rs558430190	chr3:139397107-139397108	Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
46	rs545453436	chr3:139397109-139397110	Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
47	rs187748506	chr3:139397133-139397134	Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
48	rs572610242	chr3:139397156-139397157	Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
49	rs541700488	chr3:139397176-139397177	Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
50	rs374232455	chr3:139397180-139397181	Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:55)

Disease	PMID	Source
Basal cell lymphoma	17053054	CNVD
Esophageal cancer	21851588	CNVD
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Retinoblastoma	21504564	CNVD
Medulloblastoma	21979893	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Autism	22495311	CNVD
Lung cancer	18438408	CNVD
Cancer	21129771	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Cervical cancer	21062161	CNVD
Squamous cell cancer	20885788	CNVD
Melanoma	18172304	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Bipolar disorder	18458673	CNVD
Breast cancer	22032731	CNVD
Breast cancer	16461572	CNVD
Neuroblastoma	17533364	CNVD
Cervical Cancer	21857958	CNVD
Melanoma	21693616	CNVD
Lung cancer	21426551	CNVD
Cancer	21637783	CNVD
Cervical cancer	21063398	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oral cancer	21386901	CNVD
Renal cell carcinoma	19461508	CNVD
Cancer	22065749	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
microdeletion syndrome	22180640	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Multiple myeloma	17550852	CNVD
Basal cell lymphoma	21115979	CNVD
Ovarian cancer	22174824	CNVD
Colorectal cancer	18645599	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Hepatocellular carcinoma	16750200	CNVD
Lung cancer	16740712	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Myelodysplastic syndrome	21251322	CNVD
Blepharophimosis-ptosis-epicanthus inversus syndrome	22067867	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Myelofibrosis	22110671	CNVD
abnormal development	18461090	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Schizophrenia	23813976	CNVD
Congenital anomalies of the kidney and urinary tract	20605837	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:317 , 50 per page) page: 1 2 3 4 5 6 7

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:139384400-139396000	Weak transcription	Left Ventricle	heart
2	chr3:139388800-139396000	Weak transcription	Lung	lung
3	chr3:139393400-139396200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr3:139394000-139396000	Enhancers	Brain Inferior Temporal Lobe	brain
5	chr3:139394200-139396000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr3:139394400-139396000	Weak transcription	NHEK	skin
7	chr3:139394600-139396000	Enhancers	Pancreas	Pancrea
8	chr3:139394600-139396200	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr3:139394800-139396000	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
10	chr3:139394800-139396000	Weak transcription	Fetal Brain Female	brain
11	chr3:139395000-139396000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
12	chr3:139395200-139396000	Enhancers	Primary hematopoietic stem cells	blood
13	chr3:139395200-139396000	Enhancers	Primary T helper cells fromperipheralblood	blood
14	chr3:139395200-139396000	Enhancers	Fetal Heart	heart
15	chr3:139395200-139396000	Enhancers	Right Ventricle	heart
16	chr3:139395200-139396200	Enhancers	Spleen	Spleen
17	chr3:139395200-139396800	Enhancers	Fetal Brain Male	brain
18	chr3:139395400-139396400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
19	chr3:139395400-139396400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
20	chr3:139395600-139396000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
21	chr3:139395600-139396000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
22	chr3:139395600-139396000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr3:139395600-139396000	Enhancers	Esophagus	oesophagus
24	chr3:139395600-139396000	Active TSS	Rectal Mucosa Donor 31	rectum
25	chr3:139395600-139396000	Enhancers	Thymus	Thymus
26	chr3:139395600-139396200	Flanking Active TSS	Fetal Intestine Small	intestine
27	chr3:139395600-139396200	Enhancers	Gastric	stomach
28	chr3:139395600-139396400	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
29	chr3:139395600-139396400	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
30	chr3:139395600-139396400	Flanking Active TSS	Duodenum Mucosa	Duodenum
31	chr3:139395600-139396400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
32	chr3:139395600-139396400	Flanking Active TSS	K562	blood
33	chr3:139395600-139397200	Active TSS	Primary T cells from cord blood	blood
34	chr3:139395600-139397200	Active TSS	Fetal Kidney	kidney
35	chr3:139395600-139397200	Active TSS	Pancreatic Islets	Pancreatic Islet
36	chr3:139395800-139396000	Active TSS	Breast Myoepithelial Primary Cells	Breast
37	chr3:139395800-139396000	Bivalent Enhancer	Primary B cells from peripheral blood	blood
38	chr3:139395800-139396000	Enhancers	Primary T cells fromperipheralblood	blood
39	chr3:139395800-139396000	Enhancers	Primary T helper naive cells from peripheral blood	blood
40	chr3:139395800-139396000	Enhancers	Primary T helper cells PMA-I stimulated	--
41	chr3:139395800-139396000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
42	chr3:139395800-139396000	Bivalent/Poised TSS	Primary T regulatory cells fromperipheralblood	blood
43	chr3:139395800-139396000	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
44	chr3:139395800-139396000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
45	chr3:139395800-139396000	Enhancers	Adipose Nuclei	Adipose
46	chr3:139395800-139396000	Enhancers	Liver	Liver
47	chr3:139395800-139396000	Enhancers	Brain Substantia Nigra	brain
48	chr3:139395800-139396000	Enhancers	Colonic Mucosa	Colon
49	chr3:139395800-139396000	Bivalent Enhancer	Fetal Muscle Leg	muscle
50	chr3:139395800-139396000	Enhancers	Fetal Thymus	thymus

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