Variant report

Variant	esv3431557
Chromosome Location	chr19:23235531-23244015
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:29)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:29 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF724P-1	chr19:23237399-23237800	NONHSAT063848
2	lnc-ZNF724P-1	chr19:23241267-23241381	XLOC_013273
3	lnc-ZNF724P-1	chr19:23239420-23240022	NONHSAT063850
4	lnc-ZNF724P-1	chr19:23238284-23238592	ENSG00000251233
5	lnc-ZNF724P-1	chr19:23241267-23241381	ENSG00000261615.1
6	lnc-ZNF724P-1	chr19:23242976-23243120	ENSG00000261615.1
7	lnc-ZNF724P-1	chr19:23243975-23244067	ENSG00000261615.1
8	lnc-ZNF724P-1	chr19:23243975-23244067	XLOC_013273
9	lnc-ZNF724P-1	chr19:23243449-23243800	XLOC_013273
10	lnc-ZNF724P-1	chr19:23238284-23238592	XLOC_013273
11	lnc-ZNF724P-1	chr19:23242976-23243120	XLOC_013273
12	lnc-ZNF724P-1	chr19:23239814-23240022	ENSG00000261615.1
13	lnc-ZNF724P-1	chr19:23238284-23238592	ENSG00000261615.1
14	lnc-ZNF724P-1	chr19:23239105-23239211	ENSG00000251233
15	lnc-ZNF724P-1	chr19:23237625-23238132	ENSG00000261615.1
16	lnc-ZNF724P-1	chr19:23239105-23239211	XLOC_013273
17	lnc-ZNF724P-1	chr19:23238284-23238521	XLOC_013273
18	lnc-ZNF724P-1	chr19:23243975-23244067	ENSG00000251233
19	lnc-ZNF724P-1	chr19:23239105-23239211	ENSG00000261615.1
20	lnc-ZNF724P-1	chr19:23242976-23243120	ENSG00000261615.2
21	lnc-ZNF724P-1	chr19:23242976-23243120	ENSG00000251233
22	lnc-ZNF724P-1	chr19:23243449-23243800	ENSG00000251233
23	lnc-ZNF724P-1	chr19:23241267-23241381	ENSG00000251233
24	lnc-ZNF724P-1	chr19:23243449-23243800	ENSG00000261615.1
25	lnc-ZNF724P-1	chr19:23237629-23238132	ENSG00000251233
26	lnc-ZNF724P-1	chr19:23239814-23240022	ENSG00000251233
27	lnc-ZNF724P-1	chr19:23239814-23240022	XLOC_013273
28	lnc-ZNF724P-1	chr19:23242976-23243244	NONHSAT063850
29	lnc-ZNF724P-1	chr19:23237627-23238132	XLOC_013273

No data

Variant related genes	Relation type
SYVN1	miRNA target sites
PALLD	miRNA target sites
C11orf57	miRNA target sites
SRP9	miRNA target sites
CPEB3	miRNA target sites
ARHGAP28	miRNA target sites
SUV420H2	miRNA target sites
SMARCAD1	miRNA target sites

Extended variants
information (count: 344 )
Associated
traits (count: 43 )

Variant overlapped rSNPs/rCNVs (count:344 , 50 per page) page: 1 2 3 4 5 6 7

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs556458131	chr19:23235549-23235550	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs560038819	chr19:23235575-23235576	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs578252097	chr19:23235626-23235627	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs545410554	chr19:23235684-23235685	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs532187288	chr19:23235724-23235725	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs189209633	chr19:23235746-23235747	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs111594270	chr19:23235748-23235749	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs58704317	chr19:23235767-23235768	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
9	rs538849436	chr19:23235787-23235788	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs143723874	chr19:23235798-23235799	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs558422092	chr19:23235813-23235814	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs547284718	chr19:23235823-23235824	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs74350750	chr19:23235831-23235832	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs181589494	chr19:23235841-23235842	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs550943178	chr19:23235888-23235889	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs569349412	chr19:23235930-23235931	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs80277899	chr19:23235948-23235949	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs77073981	chr19:23235972-23235973	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs375281596	chr19:23235981-23235982	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs142783118	chr19:23235993-23235994	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs73555455	chr19:23235994-23235995	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
22	rs186448331	chr19:23236021-23236022	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs578249014	chr19:23236040-23236041	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs200237995	chr19:23236115-23236116	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs73027665	chr19:23236120-23236121	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs116571563	chr19:23236137-23236138	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs563657891	chr19:23236158-23236159	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs540775488	chr19:23236161-23236162	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs575566840	chr19:23236201-23236202	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs542659114	chr19:23236261-23236262	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs144503765	chr19:23236301-23236302	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs560546935	chr19:23236306-23236307	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs547188004	chr19:23236349-23236350	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs377661178	chr19:23236361-23236362	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs559152057	chr19:23236369-23236370	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs533044869	chr19:23236380-23236381	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs190867227	chr19:23236440-23236441	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs551230117	chr19:23236466-23236467	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs569870433	chr19:23236515-23236516	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs537002931	chr19:23236520-23236521	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs180915570	chr19:23236521-23236522	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs2014522	chr19:23236561-23236562	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
43	rs2014524	chr19:23236569-23236570	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
44	rs553581651	chr19:23236651-23236652	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs578233459	chr19:23236698-23236699	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs563216237	chr19:23236724-23236725	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs531861764	chr19:23236753-23236754	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs539258642	chr19:23236765-23236766	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs2963059	chr19:23236803-23236804	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
50	rs575858923	chr19:23236844-23236845	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:43)

Disease	PMID	Source
Medulloblastoma	16783165	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Prostate cancer	16573809	CNVD
Chordoma	18071362	CNVD
Metanephric adenoma	20802469	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Oligodendroglial tumors	17285580	CNVD
Oral cancer	21386901	CNVD
ovarian endometriomas	16273235	CNVD
Endometrial cancer	22040021	CNVD
Acute myeloid leukemia	16864856	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	17387387	CNVD
Cervical cancer	21063398	CNVD
Myelodysplastic syndrome	17634407	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Retinoblastoma	21504564	CNVD
Ovarian cancer	21720365	CNVD
Cancer	20164919	CNVD
Thoracic aortic aneurysm	21092924	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Prostate cancer	18632612	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
Lung cancer	18438408	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Myelofibrosis	22110671	CNVD
Cancer	21183584	CNVD
Colorectal cancer	20459617	CNVD
small cell lung cancer	20016488	CNVD
Ductal carcinoma	22052326	CNVD
Cancer	20164920	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
early-passage human iPS cells	21368824	CNVD
Breast cancer	22522925	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:23235000-23235800	Enhancers	Placenta	Placenta
2	chr19:23235800-23237200	Weak transcription	Placenta	Placenta
3	chr19:23237200-23240400	Enhancers	Placenta	Placenta
4	chr19:23240400-23242200	Weak transcription	Placenta	Placenta
5	chr19:23242200-23243200	Enhancers	Placenta	Placenta

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