Variant report

Variant	esv3432203
Chromosome Location	chr10:28173796-28175994
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 81 )
Associated
traits (count: 45 )

Variant overlapped rSNPs/rCNVs (count:81 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs558633962	chr10:28173815-28173816	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs191235658	chr10:28173834-28173835	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs538599282	chr10:28173852-28173853	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs182353110	chr10:28173875-28173876	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs578241224	chr10:28173876-28173877	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs373007049	chr10:28173907-28173908	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs545705815	chr10:28173921-28173922	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs79146969	chr10:28173952-28173953	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs572831163	chr10:28173977-28173978	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs558694086	chr10:28174112-28174113	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs546706620	chr10:28174134-28174135	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs186621323	chr10:28174140-28174141	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs191014044	chr10:28174207-28174208	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs559856856	chr10:28174223-28174224	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs3897931	chr10:28174226-28174227	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
16	rs562361447	chr10:28174237-28174238	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs563271261	chr10:28174254-28174255	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs148924529	chr10:28174329-28174330	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs143839144	chr10:28174376-28174377	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs112657266	chr10:28174451-28174452	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs367950514	chr10:28174456-28174457	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs372131381	chr10:28174458-28174459	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs374767689	chr10:28174460-28174461	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs369296315	chr10:28174462-28174463	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs183155636	chr10:28174492-28174493	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs377506117	chr10:28174575-28174576	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs373401168	chr10:28174577-28174578	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs375517220	chr10:28174585-28174586	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs188935448	chr10:28174610-28174611	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs371016026	chr10:28174617-28174618	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs192929737	chr10:28174618-28174619	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs375599673	chr10:28174620-28174621	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs71492565	chr10:28174625-28174626	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs185103228	chr10:28174626-28174627	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs11599390	chr10:28174633-28174634	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs11599391	chr10:28174635-28174636	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs188168921	chr10:28174651-28174652	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs377541078	chr10:28174662-28174663	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs12773472	chr10:28174678-28174679	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs541293065	chr10:28174690-28174691	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs12358191	chr10:28174706-28174707	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs12771813	chr10:28174713-28174714	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs12356786	chr10:28174714-28174715	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs183927110	chr10:28174724-28174725	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs11596448	chr10:28174732-28174733	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs369474179	chr10:28174741-28174742	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs373056103	chr10:28174742-28174743	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs377365689	chr10:28174750-28174751	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs531267069	chr10:28174765-28174766	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs566740856	chr10:28174806-28174807	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:45)

Disease	PMID	Source
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
T-cell lymphomas	19863542	CNVD
Esophageal cancer	21851588	CNVD
Behavioral abnormalities	21522184	CNVD
Dysmorphic features	21522184	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Myelofibrosis	22110671	CNVD
Autism	21439084	CNVD
Maculopathy	20981449	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Breast cancer	21364760	CNVD
abnormal development	18461090	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
small cell lung cancer	20016488	CNVD
Prostate cancer	22341455	CNVD
Melanoma	20877625	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:28161000-28181800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:28172600-28174800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr10:28173400-28173800	Enhancers	Primary T cells from cord blood	blood
4	chr10:28173600-28173800	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr10:28173600-28183400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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