Variant report
| Variant | esv3432789 |
|---|---|
| Chromosome Location | chr10:19648556-19648753 |
| allele | n/a |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr10:19644040..19646101-chr10:19646355..19648931,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | rs183009587 | chr10:19648610-19648611 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 2 | rs76614533 | chr10:19648615-19648616 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 3 | rs10763965 | chr10:19648625-19648626 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 4 | rs569674090 | chr10:19648664-19648665 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 5 | rs35362193 | chr10:19648689-19648690 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 6 | rs75609713 | chr10:19648691-19648692 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 7 | rs199627523 | chr10:19648698-19648699 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 8 | rs531633178 | chr10:19648699-19648700 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 9 | rs200648186 | chr10:19648700-19648701 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 10 | rs149664585 | chr10:19648702-19648703 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 11 | rs543417991 | chr10:19648703-19648704 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 12 | rs565497056 | chr10:19648731-19648732 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 13 | rs113694866 | chr10:19648740-19648741 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 14 | rs189527391 | chr10:19648745-19648746 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
Variant related diseases (count:39)
| Disease | PMID | Source |
|---|---|---|
| Medulloblastoma | 16783165 | CNVD |
| Breast cancer | 17133270 | CNVD |
| Endometrioid adenocarcinoma | 16974079 | CNVD |
| Breast cancer | 17603634 | CNVD |
| Endometrial cancer | 22040021 | CNVD |
| Glioblastoma multiforme | 21080181 | CNVD |
| Breast cancer | 21264507 | CNVD |
| Esophageal squamous carcinoma | 21637470 | CNVD |
| Phyllodes tumor | 17334353 | CNVD |
| Acute lymphoblastic leukemia | 17690704 | CNVD |
| Pancreatic endocrine tumor | 17639061 | CNVD |
| Gastric cancer | 17908304 | CNVD |
| Chordoma | 21602918 | CNVD |
| Ewing''s sarcoma | 21437220 | CNVD |
| Medulloblastoma | 21979893 | CNVD |
| Melanoma | 18172304 | CNVD |
| Pleomorphic xanthoastrocytoma | 20730472 | CNVD |
| Lung cancer | 18438408 | CNVD |
| Thoracic aortic aneurysm | 21092924 | CNVD |
| Ewing''s sarcoma | 17952124 | CNVD |
| Oral cancer | 21386901 | CNVD |
| Acute lymphoblastic leukemia | 20435627 | CNVD |
| T-cell prolymphocytic leukemia | 19278963 | CNVD |
| Hodgkin''s lymphoma | 17606441 | CNVD |
| Breast cancer | 21858162 | CNVD |
| Acute lymphoblastic leukemia | 20724749 | CNVD |
| Autism | 22495311 | CNVD |
| Acute lymphoblastic leukemia | 22237106 | CNVD |
| Intracranial aneurysm | 16715129 | CNVD |
| Cutaneous T-cell lymphoma | 21881587 | CNVD |
| Myelofibrosis | 22110671 | CNVD |
| Multiple myeloma | 16616336 | CNVD |
| T-cell lymphomas | 19863542 | CNVD |
| Esophageal cancer | 21851588 | CNVD |
| small cell lung cancer | 20016488 | CNVD |
| Epilepsy | 22083797 | CNVD |
| Olfactory neuroblastoma | 18408657 | CNVD |
| Chronic lymphocytic leukemia | 21546498 | CNVD |
| Breast cancer | 21364760 | CNVD |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:19615000-19657000 | Weak transcription | Duodenum Mucosa | Duodenum |
| 2 | chr10:19639800-19661600 | Weak transcription | Fetal Intestine Small | intestine |
| 3 | chr10:19642600-19657600 | Weak transcription | Fetal Intestine Large | intestine |
