Variant report

Variant	esv3433542
Chromosome Location	chr6:163425663-163426860
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:163426091..163427659-chr6:163429418..163431049,2	K562	blood:

Extended variants
information (count: 50 )
Associated
traits (count: 87 )

Variant overlapped rSNPs/rCNVs (count:50 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs546517669	chr6:163425682-163425683	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs563105181	chr6:163425732-163425733	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs374627693	chr6:163425733-163425734	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs375876796	chr6:163425734-163425735	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs531927635	chr6:163425754-163425755	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs536293093	chr6:163425758-163425759	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs200622131	chr6:163425759-163425760	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs62429319	chr6:163425760-163425761	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs375703025	chr6:163425762-163425763	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs201719944	chr6:163425767-163425768	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs200209887	chr6:163425769-163425770	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs146095540	chr6:163425770-163425771	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs201246782	chr6:163425771-163425772	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs372970640	chr6:163425773-163425774	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs201322947	chr6:163425788-163425789	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs80154555	chr6:163425789-163425790	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs527293036	chr6:163425811-163425812	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs115677336	chr6:163425832-163425833	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs182658404	chr6:163425846-163425847	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs367564590	chr6:163425874-163425875	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs539393730	chr6:163425890-163425891	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs62429320	chr6:163425891-163425892	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs369417558	chr6:163425952-163425953	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs549640752	chr6:163425973-163425974	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs11963795	chr6:163426005-163426006	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
26	rs535600815	chr6:163426015-163426016	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs554787898	chr6:163426016-163426017	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs528275473	chr6:163426023-163426024	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs112102027	chr6:163426033-163426034	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs117975372	chr6:163426045-163426046	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs554246612	chr6:163426080-163426081	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs186987237	chr6:163426105-163426106	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs546554459	chr6:163426114-163426115	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs563142301	chr6:163426234-163426235	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs576731625	chr6:163426241-163426242	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs542365586	chr6:163426383-163426384	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs533881790	chr6:163426441-163426442	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs112428951	chr6:163426499-163426500	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs561640976	chr6:163426525-163426526	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs558682489	chr6:163426574-163426575	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs576987934	chr6:163426632-163426633	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs540768146	chr6:163426688-163426689	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs115701881	chr6:163426694-163426695	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs116160574	chr6:163426707-163426708	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs28796392	chr6:163426809-163426810	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs10945871	chr6:163426813-163426814	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
47	rs28827813	chr6:163426823-163426824	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs569586136	chr6:163426826-163426827	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs34348407	chr6:163426834-163426835	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
50	rs549120870	chr6:163426841-163426842	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:87)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Melanoma	18172304	CNVD
Cancer	21637783	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Colorectal cancer	16272173	CNVD
Ependymoma	16718352	CNVD
Gastric cancer	17908304	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	16272173	CNVD
Wilms tumour	21544195	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Breast cancer	21858162	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	17603634	CNVD
Developmental delay	19490664	CNVD
Burkitt''s lymphoma	18698080	CNVD
Neurodevelopmental disorder	22521361	CNVD
small cell lung cancer	20016488	CNVD
Adenoid cystic carcinoma	18698036	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Leukemia	18688285	CNVD
Renal cell carcinoma	18592004	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Prostate cancer	18632612	CNVD
Lung cancer	18438408	CNVD
Burkitt''s lymphoma	19759907	CNVD
Esophageal cancer	21851588	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Breast cancer	17133270	CNVD
Testicular germ cell tumor	18059402	CNVD
Developmental delay	21147756	CNVD
Chordoma	18071362	CNVD
Myelofibrosis	22110671	CNVD
Autism	22241247	CNVD
Breast cancer	16397240	CNVD
Atherosclerosis	21956041	CNVD
Maculopathy	20981449	CNVD
Retinoblastoma	22278416	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Ovarian cancer	20844748	CNVD
Uveal melanoma	20484589	CNVD
Glioblastoma multiforme	19435819	CNVD
Astrocytoma	16205629	CNVD
Parkinson disease	17160897	CNVD
Ovarian cancer	21720365	CNVD
Glioblastoma multiforme	21138945	CNVD
Ovarian cancer	22355333	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD
abnormal development	18461090	CNVD
Cancer	20164919	CNVD

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:163421400-163429600	Weak transcription	Pancreas	Pancrea

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links